Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1244 ATGTCGTTCAGGATCGGTGTTATGGTTCTGGGGTTTCGTTTGTCATACGCCAAGTTTGTGGGCTACATCCCCAAGAAGGCAAAAAAATCTGGTGTGGCTAATGGAGTTTTAAGCTGCATTATTTCAATGGGAATTTCAGACTTCTGGATCAAAAACATGATCTTTTATGCACAACTACAGAGAACCAACAAATTCTGCACTTGTCATTTCATATCTACTCTTTTTCCTGAAGTAAAGTTAACCCCTAAAAAGGACAATTTTGATATTGTTGATTGTTCTGGCTCCTTAATTCATACACGGAAGGCAAGTTGGAGATATTGTTACGTATTGGCTTGCATAAAATTACTAATGGGGACAGAACTTATGAGCATATGTGTTAAAGAAGACAATGAGTGTCCATCAGTTCCACCAGGTTTTGAGTCATCTACATCTTTCCCACTGAGGAGTGTAGAAGTCGATGAGAAACAGAATGATAAAAACCTGACCAGTACAGCCTCCACGATTGCCTTTGACTCACAGGTGCTGGTGGAAACTGAGGCTCATGTCAGTAATACTGCAAAGGTTTCTAGGTCCCTTCGTCGAAGACCATGGATTAACTATGGACGATATGATAACAGTTCAGATGAAGAGTCTGATTCTGAGAGGCTTGATCAAAATTTCTCCTCAAGACCTTGTCTTCCTAGGGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGAGACCAGAAGATGCTTGCAGGCCAAACCTTGAGGATGCTCCTGTCTTTTATCCAACAGAAGAGGAGTTTCAAGATACCTTAAAATATATAGCAAGCATTCGCTCCAAAGCTGAACCATATGGAATATGTCGCATTGTTCCTCCTACTTCTTGGGAACCTCCTTGTCCTCTCAAGGAGAAAAGTGTATGGGAGGCTTCTAAATTTGCAACTCGTGTCCAAAGAATTGACAAACTTCAGAATCGTGATTCAATGAGAAAGATTTCAAGGATTCATAGTCAGACGAAAAGGAAGAGGAGAAGATGCACAAGAATGGGGATGGATAGTGGACTTAATAGAGGACCTAAGGCAAGATGTTGTGAGGCTGAAAGTTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATACGCAGATGATTTTAAGGCCAGATACTTCAGAAATAATGAGAGTGTGCATCATTTGGGAGGTGATACAACCATGCTAAAAGGCACCTTAGAGCCTTCTGTAGATAGTATTGAGGGTGAATATTGGAGAATAGTAGAGAGACCTACTGAAGTAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGATTTCCTAGAAAGTCTAGTCAAGTTAACTCTGCTTCACATGAACGGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCTCGGCTTCCTGGATCTGTTCTCTCTTATGAAAGCAGTGATATATCTGGTGTTCTACATGTGGAAGATCACCATTTATATTCGTTGAATTACATGCATTGGGGTGCTCCTAAAATGTGGTATGGTGTCCCTGGAAAAGATGCTTGCAAATTGGAGGAGGCCATGAGAAAACATTTATCAGAACTGTTTGAAGAACAACCTGACTTGCTTCATAAGCTGATCACCCAACTTTCTCCTTCCATCCTGAAGTCTGAAGGAGTACCTGTCTATAGGTGTGTCCAGAAGCCTGGAGAATTTGTTCTGACATTCCCACGAGCCTATCATTCTGGGTTCAACTGTGGTTTCAACTGTGCAGAGGCAGTTAATGTGGCTCCAGTTGACTGGCTGCCTCATGGGCAGATTGCTATTGAGCTGTACCAGAAGCAGGGGCGCAAGACATCTATATCCCATGATAAGCTGTTGCTCGGGGTGGCTAGGGAAGCAGTACAAGCACAGTGGGAGATTAATTTGCTAAAGAAGAATACTTCAGATAATCTAAGATGGAAAGAAGCCTGTGGAAAGGATGGCCTTCTGGTAAAAGCACTCAAGACACGAGTTGAGATGGAACGTGTAAGGAGGGAGTTTTCCTTCATTTCTTCACAGGCATTAAAAATGGAGAGCAGTTTTGACGCCATAAGTGAAAGGGAATGCAGTATTTGCTATTTTGATTTACACCTATCTGCAGTTGGTTGCCGTTGTTCCCCTGATCGATATGCTTGCTTGGATCATGCCAAGCAGCTCTGTTCCTGTGATTGGGGTTCCAAATTCTTCCTCTTTCGTTATGATATTAGTGAATTAAATATTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTATACAGATGGGCAAAATTAGATCTTGGGTTTGCACTAACTTCTTCTGTCTCAGAAGAGAAGGAAACAATACTTAAGGAATTAAGATTGCATTCATCAGCAGTTTCTCTGGAAGATTCTCATTTGATAGACGTTCCCATAGAGAATCTGGCAAATTCAGAAAATATAATTGATCATAGATATTTATGGAAGAGGAAATCGGAAGAAGCTATGCCTTCTTTGAGTCATATGAAGGAGCTGTTAACATCTAATTGCTCAACTTCCGGATGTGAAATGGATACACATAAGACCTATTCTGAGAAAGAAGAATCTGGTATTTGCAGATCAAACAGGAAAACTCCTGGTTGTCAGTTGTCCCAGGAGGATATATCATATGCTTTATCTCTGCCTCTAGCTAAACATGGAACTGATAAAATTTCACTTTATGGACATGACAATGTTATACTTCTTAGTGATGATGAAGCTGATGAGCTGAAGGTGCCAGATTCCGACAGAGGGCAGGAATTTTCTCTGAAGCTCACAGTTTCAAGCGATAAAGCAAGCCCATGTAATAAAGCAGATGATCCAGACTTGACCATCCCTGTGACTGATGCTGCTGTGATGGGTGAAAAGGATGCTATTACGTTGACTCATGAAAAAATGAGTTCTCATTCAACTCAACATTTTCATGTGAAACAGGAACATCATAGGGAAACAGTGCTAGGTTCTGCCCCATTAGATTTTTCTCTCCATAAAGGTTTTAATGGTGCAGGAGCAGGATTAGTTAAAAATGTTCAGGCTTCTACAGAGGGACAGACTAGACATCATAGTTTGGAAACTTCAGATAGTTTTTCTCAGAATCCACAGCATTCTGTCAAGCCTGAGAATGAGGACAACCAAGAAAAGTTGGGAGGATGTGCCATTTCTAATATGGTAGACAATGTAAGAACTGTGAATGGAAACCTGTCTTGCAGTCCTAACAATTTGGATAGGTATTTCCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTCAGGCGTATCAACTGCAATGTTGAAATTCTGGAATTTGGGGTTGTGCTTTCTGGAAAGTCATGGTGTAGCAGTCGGGCTATATTTCCAAAAGGATATAGAAGTCGTGTTAGATACATAAGTGTTTTGGATCCATCCAATATGAATTATTATGTTTCAGAAATTCTTGATGCTGGACGTGATGGGCCTTTGTTTATGGTGTCCTTCGAACATTGTCCAAGTGAGGTCTTTATTCATATCTCACCTACAAGATGTTGGGAACTGGTAAGAGAAAGAGTGAATCAAGAGATCACAAAACAACATAAGCTGGGGAGAAAGAATCTTCCTCCTTTACAGCCTCCTGGGAGTCTCGACGGATTTGAAATGTTTGGTTTTTCTTCACCAGCGATAGTGCAGGCTGTTGAGGCACTAGACCGAAACCGAGTTTGTAATGAATATTGGGAATCCCGGCCATACTCCCGGCTGCAAGGGCAGATTGCACAAGCCTCTCAACCCAATGTAAATGGTGGAAAATTGCATGCGCTATCTGGGGAGAGAAATGGCTCAGGAGTCCTCAAGAATCAGTTCTTGCCTGTTGGAGATGATGCAGTGCTGAGGAATCTGTTTAAAAAGGCCAATGCTGAAGAATTGAAGTCATTGTGCAGTATTTTATGTGACAATAGGCCATCAGCAGAGCGGAGCCTAATTGCACAACTGCTTAATGAAGAGATTCACCAACCGTCCTAG 4050 0.4153 MSFRIGVMVLGFRLSYAKFVGYIPKKAKKSGVANGVLSCIISMGISDFWIKNMIFYAQLQRTNKFCTCHFISTLFPEVKLTPKKDNFDIVDCSGSLIHTRKASWRYCYVLACIKLLMGTELMSICVKEDNECPSVPPGFESSTSFPLRSVEVDEKQNDKNLTSTASTIAFDSQVLVETEAHVSNTAKVSRSLRRRPWINYGRYDNSSDEESDSERLDQNFSSRPCLPRGVIRGCPDCSNCQKVVARWRPEDACRPNLEDAPVFYPTEEEFQDTLKYIASIRSKAEPYGICRIVPPTSWEPPCPLKEKSVWEASKFATRVQRIDKLQNRDSMRKISRIHSQTKRKRRRCTRMGMDSGLNRGPKARCCEAESFGFEPGPEFTLETFQRYADDFKARYFRNNESVHHLGGDTTMLKGTLEPSVDSIEGEYWRIVERPTEVIEVLYGADLETGIFGSGFPRKSSQVNSASHERYIKSGWNLNNFARLPGSVLSYESSDISGVLHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLSELFEEQPDLLHKLITQLSPSILKSEGVPVYRCVQKPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYQKQGRKTSISHDKLLLGVAREAVQAQWEINLLKKNTSDNLRWKEACGKDGLLVKALKTRVEMERVRREFSFISSQALKMESSFDAISERECSICYFDLHLSAVGCRCSPDRYACLDHAKQLCSCDWGSKFFLFRYDISELNILVEALEGKLSAVYRWAKLDLGFALTSSVSEEKETILKELRLHSSAVSLEDSHLIDVPIENLANSENIIDHRYLWKRKSEEAMPSLSHMKELLTSNCSTSGCEMDTHKTYSEKEESGICRSNRKTPGCQLSQEDISYALSLPLAKHGTDKISLYGHDNVILLSDDEADELKVPDSDRGQEFSLKLTVSSDKASPCNKADDPDLTIPVTDAAVMGEKDAITLTHEKMSSHSTQHFHVKQEHHRETVLGSAPLDFSLHKGFNGAGAGLVKNVQASTEGQTRHHSLETSDSFSQNPQHSVKPENEDNQEKLGGCAISNMVDNVRTVNGNLSCSPNNLDRYFRQKGPRIAKVVRRINCNVEILEFGVVLSGKSWCSSRAIFPKGYRSRVRYISVLDPSNMNYYVSEILDAGRDGPLFMVSFEHCPSEVFIHISPTRCWELVRERVNQEITKQHKLGRKNLPPLQPPGSLDGFEMFGFSSPAIVQAVEALDRNRVCNEYWESRPYSRLQGQIAQASQPNVNGGKLHALSGERNGSGVLKNQFLPVGDDAVLRNLFKKANAEELKSLCSILCDNRPSAERSLIAQLLNEEIHQPS 1349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1244 1349 Pfam F/Y-rich N-terminus 1116 1163 IPR003888 GO:0005634
Bisa07g1244 1349 SMART JmjN_1 259 300 IPR003349 -
Bisa07g1244 1349 Pfam C5HC2 zinc finger 710 760 IPR004198 -
Bisa07g1244 1349 MobiDBLite consensus disorder prediction 1032 1066 - -
Bisa07g1244 1349 Pfam F/Y rich C-terminus 1170 1254 IPR003889 GO:0005634
Bisa07g1244 1349 SUPERFAMILY Clavaminate synthase-like 472 647 - -
Bisa07g1244 1349 MobiDBLite consensus disorder prediction 1032 1058 - -
Bisa07g1244 1349 PANTHER LYSINE-SPECIFIC DEMETHYLASE 252 1175 - -
Bisa07g1244 1349 SMART cupin_9 472 620 IPR003347 -
Bisa07g1244 1349 Gene3D Cupin 245 604 - -
Bisa07g1244 1349 SMART fyrc_3 1172 1266 IPR003889 GO:0005634
Bisa07g1244 1349 ProSiteProfiles FYR domain FYRC motif profile. 1168 1259 IPR003889 GO:0005634
Bisa07g1244 1349 ProSiteProfiles JmjN domain profile. 260 301 IPR003349 -
Bisa07g1244 1349 ProSiteProfiles FYR domain FYRN motif profile. 1108 1166 IPR003888 GO:0005634
Bisa07g1244 1349 FunFam Putative lysine-specific demethylase JMJ16 1114 1252 - -
Bisa07g1244 1349 Gene3D - 1111 1252 - -
Bisa07g1244 1349 SMART fyrn_3 1122 1166 IPR003888 GO:0005634
Bisa07g1244 1349 ProSiteProfiles JmjC domain profile. 456 620 IPR003347 -
Bisa07g1244 1349 Pfam JmjC domain, hydroxylase 499 603 IPR003347 -
Bisa07g1244 1349 Pfam jmjN domain 261 294 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1244 Bisa-ChrBisa07 31625493 31638066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1244 117 1346 JUMONJI Transcription Factor Family AT1G08620 53.749 0.0 1191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bisa07g1244 JmjC 5.7e-38 CL0029