Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1242 ATGGCGGCTCCATCTACCTCTGCTGCTTCATCCGTTTCATCGCAATTCACCTACTCCAACGGATCATACTTTCCTGTGCCTTTTCACCTTCAGCAATCCGTAGCGACACTGTACGCTGCAACACCATATGCGGCGGCTTCTGCAGCAGCACCGGCATTGCAGGTTCCGGCTGCCCCCGTTTATCCCGCTCCGGTGCCGGTAGCTGGTGTGTATTCTCTGCCGCAGTATCAGCAGGCGCAGCAGCTATTTCAAAGGGATGCACAAACAATTACACCTGAGGCTCTTGAGAGTGTTAAGGCAGCCATTGCAAACAGTGAGCTTGAGCACAAGGCAGAGGCCAAAAAGAAAGCAGTTCCTCGCAAAGCTGCTGGTCAAACATGGGAGGATCCAACTCTTGCAGATTGGCCAGAAAATGATTATCGGCTCTTTTGTGGCGATCTTGGTAATGAGGTGACTGATGATGTTCTTTCAAAAGCATTTTCTCGATTTCCTTCCCTTAATATGGCCCGAGTTGTCAGAGACAAACGGACTGGAAAAACAAAAGGTTATGGATTTGTGAGTTTCGCCAATCCCGCTGACCTTGCTGCCGCCCTTAAAGAAATAAACGGTAAATATGTTGGAAATCGGCCGATTAAACTGCGCAAGAGTAAGTGGCAGGAGAGGACAGATTTTGAGGCCCTGGAAAAACAAAAGAACCAAACTCACAAGAAACTGAAATTGCCGAGGAAGGCATTGGATTGGTTAGTAAACATCCAGAGACTTGATTGTGGAATTGCAATGTCGAAGCTAACCATCGCAAATTGGCTGGTGGGTATAAAGGGCTATGTTGTCAACTGGGAAGAAGTTGGAATTATGAGAAAGGATCTAGCAGCAAAACATAGCTGTAATTGTAGCCGAAGACTCTACGAATCCAAAAGGATATATACGGTGACCGGACGGATTCAGGAAGGTCGAACCTGA 960 0.475 MAAPSTSAASSVSSQFTYSNGSYFPVPFHLQQSVATLYAATPYAAASAAAPALQVPAAPVYPAPVPVAGVYSLPQYQQAQQLFQRDAQTITPEALESVKAAIANSELEHKAEAKKKAVPRKAAGQTWEDPTLADWPENDYRLFCGDLGNEVTDDVLSKAFSRFPSLNMARVVRDKRTGKTKGYGFVSFANPADLAAALKEINGKYVGNRPIKLRKSKWQERTDFEALEKQKNQTHKKLKLPRKALDWLVNIQRLDCGIAMSKLTIANWLVGIKGYVVNWEEVGIMRKDLAAKHSCNCSRRLYESKRIYTVTGRIQEGRT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1242 319 SUPERFAMILY RNA-binding domain, RBD 124 219 IPR035979 GO:0003676
Bisa07g1242 319 Gene3D - 75 214 IPR012677 -
Bisa07g1242 319 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 67 235 - -
Bisa07g1242 319 CDD RRM_RBM42 134 216 IPR034215 -
Bisa07g1242 319 SMART rrm1_1 141 214 IPR000504 GO:0003723
Bisa07g1242 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Bisa07g1242 319 FunFam RNA-binding protein 42 75 225 - -
Bisa07g1242 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1242 Bisa-ChrBisa07 31555846 31559713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1242 142 318 Eukaryotic Initiation Factors Gene Family AT4G34110 25.946 3.26e-08 53.1