Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1205 ATGGCCTTTGAGCACTACTTTTCCCAGGAATGGAAAAGCATCTCAAGTACTGTGACAGAGACCGAAAATTACAATGGTTGTTTTGATTGCAACATCTGCTTAGACTCTGCTCATGAGCCTGTAGTCACCCTCTGTGGCCACCTCTATTGCTGGCCTTGCATCTACAAGTGGCTCCATATCCAAACTGCTTCTCTTGCATCTGATGAGCACCCACAATGCCCAGTATGCAAGGCCGATATATCTCATGCCACAGTGGTCCCCCTCTATGGCCGGGGCCAAGCCCAAGCTCAAAGCGAGTGTGATGGGAGGGCATTGTGTCGAGACATTTTTATACCGCCAAGACCATCTGCTTTTGGTGCTCAAGCTCTGTTGCCAACATCATCCTCTCAAGGTGGCCGCCATCAGCTGGTTCCTTCTTATCAGAGTCATCAACATTTTAGCTCTCCTCAGTACCAAGAGGAGGATGCCTCATCACAAATGCTCAATCTCAACACCACCGTGACACCTGCTGGATTACACCACCCGGTGGTTGGGATGGTTGGAGAGATGGTTTATGCTAGAGTGTTTGGCAACTTGGAAAATCTATATGCGTACCCCAACTCTTATCACATGATGAGAAGTAATAGTCCCAGACTGAGAAGGCAAGAGATGCAAGCAGACAAGTCATTGAACAGAATCTCAATTTTCCTCTTTTGCTGCTTTCTGTTGTGTCTCATTGTCTTTTGA 726 0.4738 MAFEHYFSQEWKSISSTVTETENYNGCFDCNICLDSAHEPVVTLCGHLYCWPCIYKWLHIQTASLASDEHPQCPVCKADISHATVVPLYGRGQAQAQSECDGRALCRDIFIPPRPSAFGAQALLPTSSSQGGRHQLVPSYQSHQHFSSPQYQEEDASSQMLNLNTTVTPAGLHHPVVGMVGEMVYARVFGNLENLYAYPNSYHMMRSNSPRLRRQEMQADKSLNRISIFLFCCFLLCLIVF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1205 241 SUPERFAMILY RING/U-box 25 89 - -
Bisa07g1205 241 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Bisa07g1205 241 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Bisa07g1205 241 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 131 - -
Bisa07g1205 241 CDD RING-HC_AtRMA-like 28 78 - -
Bisa07g1205 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 238 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bisa07g1205 241 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Bisa07g1205 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 90 IPR013083 -
Bisa07g1205 241 SMART ring_2 30 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1205 Bisa-ChrBisa07 30571998 30572723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1205 23 227 C3H Transcription Factor Family AT4G27470 43.810 7.15e-52 167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g1205 07 30571998 30572723 Bisa07g1205 07 30571998 30572723 ECH