Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1169 ATGCGCTTTCTGGAGGGCCCGTCCCTGCTTTTACAAAGAGGGAGTACAGGGTTTCAAATATATATTCATGATTATATGAAGAAAAGGGGAATGGATAGGACTGCTGCAATTTTCCGAAAGGAAACGGATGTTAATAACGATCCCGTTGCAATTGAGACTCCAGAAGGTTTCTTGCATGAATGGTGGTCTATTTTCTATGAGAGATATTGCTCTGCGCACCTGAAGCATCAGGAGACTGGACCAGAAGCCTCTAGTAAGTCCTTACAAAAGACCGATAATGAAAGAAAAAATCTTCCTCCCAGAGTCCCTCAGCTATCAGTAAGGGAGCAGAGACCTGAGCAGTTTCGAATCGACTCCAACATACACAAGATGATGGATCAGCCAGCTGCTCATGTATTACCATCAAGAGTTCATGACACAGAGTACCTTAGATATCTGTCTGTCAAAGCTGTTGATCCAAGTTTACAACTTATCACGGCAAAAAGACTAAAGTTCTTGGCAGGGACTAGTTCAAATCATCCACAACAAGATACTGTCAATGTCAAGCAGGTGGAGTACCAATTCTATAAGGATTTTGGAATAGACGTTCACCTCAAAAGCAATGTGGACACCTGGGATTTAGTACAAAGAGCGCTTCGAACTTCAGATGGACCTTGTGAAACAAGAACCAATGAAGGTTTCAATCTGGCGCCACTAAATGGACGTCCTCTAAATAATCAGGTACTAACTTCACTTTTGCAAGCACCAAACTATCAACAGGAATTACAGGCGCTAAAAACACAAAATCAGCAAGCACCGTTAAGTCAAGTACTTGCATGTACCCTTAAAAGTCAGACATCCACACTTCCCGGAAGGTCTTCCATATCTAACAGTCAATATCTGAGGATTCCCCTGACTGAAACTGAATTCAAAAAGAAGGATAGGCAGGGTGTTATAATTGCAGCAGATGATAAACCTGTGGATGAAAACATTGAGTCTTTCCTGTCTAATGAAAACGATCATGCTGATCATAGAACTGTGCCTATCAGCAATCTGAAACGTATTTCTGCTACAAGTGATATAATTGAAAGTGAAGATTTTTCATTTGAAGAGGTTGGTTGCCTTCACTCAAGCAAAAACAAAGTTTTGTCCTGCAATTTTTCATCTGATGGGAAGGTTTTAGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAATATGGAAACTTTTGATTGTGTTACTTCTTCAGAAGCACATTCAGATCTCATTACAGATGTTCGTTTCAAACCAGGTTCAACCATATTTGCAACATCTTCGTTTGATAAAACTATAAGAATATGGGATGCAGCCAGACCAAACAAACCATTGTTCGATCTATCTGGGGGGCATGATGAACAAGTAACTTCATTGGACTTCCACCCAAGAAAGGTGGACCTACTTTGCTCATGTGATAGAAATGACATAATTCGATTATGGAATGTCAACCAGCGTGTTTGCTTGCGTGTCACAAAGGGAGGTAGTGAACAAATCAGGTTCCAGCCTCGATTTGCGAAGTTTTTGGCTACTGCTACAGGAAATAATGTCAATATAATTGATATTGAGAGTGACAAAGTTGTATGCAAGCTAGAGGGACATGTTAAAGATGTTCTTTCCATTTGTTGGGATGTGAGAGGAAGCTATGTTGCCTCTGTAAGTGAAGATAGTGCACGTGTGTGGTCTATAATGTCTGGTGGAGAATGCACACAAGAATTGCATTCAAATGGGAACAAGTTTCAATCGTGCATATTTCATCCTGTATATTTTAACCTCTTAATCATTGGTTGCCATCAGTCCCTGGAGTTTTGGATTCCAACTGAAAGCTGTAAAACTTGGAGTCTTCCTGCCCACAAGGGAACAGTCGCTGGACTAGGAGCATCGCCCCAAAATCAAATGGTTGCCTCAGCTAGCCATGATCATTGCGTGAAACTATGGAAATGA 1959 0.4099 MRFLEGPSLLLQRGSTGFQIYIHDYMKKRGMDRTAAIFRKETDVNNDPVAIETPEGFLHEWWSIFYERYCSAHLKHQETGPEASSKSLQKTDNERKNLPPRVPQLSVREQRPEQFRIDSNIHKMMDQPAAHVLPSRVHDTEYLRYLSVKAVDPSLQLITAKRLKFLAGTSSNHPQQDTVNVKQVEYQFYKDFGIDVHLKSNVDTWDLVQRALRTSDGPCETRTNEGFNLAPLNGRPLNNQVLTSLLQAPNYQQELQALKTQNQQAPLSQVLACTLKSQTSTLPGRSSISNSQYLRIPLTETEFKKKDRQGVIIAADDKPVDENIESFLSNENDHADHRTVPISNLKRISATSDIIESEDFSFEEVGCLHSSKNKVLSCNFSSDGKVLASAGHEKKVFIWNMETFDCVTSSEAHSDLITDVRFKPGSTIFATSSFDKTIRIWDAARPNKPLFDLSGGHDEQVTSLDFHPRKVDLLCSCDRNDIIRLWNVNQRVCLRVTKGGSEQIRFQPRFAKFLATATGNNVNIIDIESDKVVCKLEGHVKDVLSICWDVRGSYVASVSEDSARVWSIMSGGECTQELHSNGNKFQSCIFHPVYFNLLIIGCHQSLEFWIPTESCKTWSLPAHKGTVAGLGASPQNQMVASASHDHCVKLWK 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1169 652 ProSiteProfiles Trp-Asp (WD) repeats profile. 620 652 IPR001680 GO:0005515
Bisa07g1169 652 ProSiteProfiles Trp-Asp (WD) repeats profile. 410 442 IPR001680 GO:0005515
Bisa07g1169 652 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 409 IPR001680 GO:0005515
Bisa07g1169 652 ProSitePatterns Trp-Asp (WD) repeats signature. 474 488 IPR019775 -
Bisa07g1169 652 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 403 - -
Bisa07g1169 652 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 18 652 IPR044716 GO:0003714
Bisa07g1169 652 Pfam LisH 21 42 IPR006594 GO:0005515
Bisa07g1169 652 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 410 442 - -
Bisa07g1169 652 CDD WD40 364 652 - -
Bisa07g1169 652 ProSiteProfiles Trp-Asp (WD) repeats profile. 454 496 IPR001680 GO:0005515
Bisa07g1169 652 Gene3D - 505 652 IPR015943 GO:0005515
Bisa07g1169 652 Gene3D - 345 504 IPR015943 GO:0005515
Bisa07g1169 652 SMART WD40_4 490 526 IPR001680 GO:0005515
Bisa07g1169 652 SMART WD40_4 446 487 IPR001680 GO:0005515
Bisa07g1169 652 SMART WD40_4 529 567 IPR001680 GO:0005515
Bisa07g1169 652 SMART WD40_4 361 400 IPR001680 GO:0005515
Bisa07g1169 652 SMART WD40_4 613 652 IPR001680 GO:0005515
Bisa07g1169 652 SMART WD40_4 403 442 IPR001680 GO:0005515
Bisa07g1169 652 MobiDBLite consensus disorder prediction 78 110 - -
Bisa07g1169 652 SUPERFAMILY WD40 repeat-like 361 652 IPR036322 GO:0005515
Bisa07g1169 652 Pfam WD domain, G-beta repeat 533 567 IPR001680 GO:0005515
Bisa07g1169 652 Pfam WD domain, G-beta repeat 369 400 IPR001680 GO:0005515
Bisa07g1169 652 Pfam WD domain, G-beta repeat 450 487 IPR001680 GO:0005515
Bisa07g1169 652 Pfam WD domain, G-beta repeat 405 442 IPR001680 GO:0005515
Bisa07g1169 652 Pfam WD domain, G-beta repeat 617 652 IPR001680 GO:0005515
Bisa07g1169 652 ProSiteProfiles LIS1 homology (LisH) motif profile. 21 46 IPR006594 GO:0005515
Bisa07g1169 652 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 620 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1169 Bisa-ChrBisa07 29707856 29716614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1169 385 651 Miscellaneous Gene Families AT5G08390 22.064 4.07e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bisa07g1169 WD40 0.0083 CL0186