Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1162 ATGGAAGCAAACACAGGAGAGGGAAAGAGGAGCTTCAAGTACGGAAGGCCGGAGGAGGAGGAGGAGGAGGTGGAAGAAGAAGAGGAAGAAGAAATAGAGGGAAGTGATAATCAGTTTGGTTGGGGAGAGGATGGAAGAAAGAAGATGAGAGATCTGCAAAGCAAGAGAGGCTCCTCCTCCTCCTCCTCCTCCTCGTCAATGGCGCCGCCTTCGTGTCAGGTGGAAGGTTGTTTCCGTGATATGAGTGATGCCAAGCATTACCACCGCCGCCACAAAGTCTGTGAGTTTCATGCCAAGGCTGCTTCCGTACTTATTGCAGGCTTGCACCAACGGTTTTGCCAGCAATGTAGCAAGTTTCACGAGCTGTCAGAGTTTGATGACACGAAAAGGAGTTGTAGAAGGCGTTTGGCTGGACACAACGAGAGGCGTCGAAAGAATGCATCCAATTATCAGGGAGAAGCACTTTATTGA 471 0.5011 MEANTGEGKRSFKYGRPEEEEEEVEEEEEEEIEGSDNQFGWGEDGRKKMRDLQSKRGSSSSSSSSSMAPPSCQVEGCFRDMSDAKHYHRRHKVCEFHAKAASVLIAGLHQRFCQQCSKFHELSEFDDTKRSCRRRLAGHNERRRKNASNYQGEALY 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1162 156 MobiDBLite consensus disorder prediction 1 74 - -
Bisa07g1162 156 Pfam SBP domain 72 145 IPR004333 GO:0003677
Bisa07g1162 156 SUPERFAMILY SBT domain 70 149 IPR036893 GO:0003677|GO:0005634
Bisa07g1162 156 PIRSF SBP 6 155 IPR017238 GO:0003677|GO:0003700|GO:0009908
Bisa07g1162 156 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Bisa07g1162 156 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 53 147 IPR044817 GO:0003677
Bisa07g1162 156 MobiDBLite consensus disorder prediction 55 71 - -
Bisa07g1162 156 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
Bisa07g1162 156 Gene3D - 62 133 IPR036893 GO:0003677|GO:0005634
Bisa07g1162 156 MobiDBLite consensus disorder prediction 1 18 - -
Bisa07g1162 156 Coils Coil 18 38 - -
Bisa07g1162 156 MobiDBLite consensus disorder prediction 40 54 - -
Bisa07g1162 156 MobiDBLite consensus disorder prediction 19 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1162 Bisa-ChrBisa07 29596832 29598315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1162 72 149 SBP-box Gene Family AT2G33810 75.641 2.03e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bisa07g1162 SBP 1.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g1162 07 29596832 29598315 Bisa07g1162 07 29596832 29598315 ECH
Bisa12g0557 12 8225737 8226937 Bisa07g1162 07 29596832 29598315 ECH