Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1159 ATGCCAATTAACCTATTTCTCGTTGAAAGGCAAGAGTCACGAAGACCGTCCGGCCTGCCAGACCCACAGGGTAAAAATCAGGTGCGTGACGGTGCCCCCTCCTCTGCGCCTGCGCTCTTAATCTCTCTATCGTTCTCTCTCTGTGAAGGTCAAGGCGTCAAGTCACGCTTTGCCACCTTCGTAACGATAGCAATCACCACCACTTCACACTGCTTAGCTTTGTGTGGGTATCTTTCGCTTGCCAGATTTTTGCTTCTAGGAAAAGCAATGCCAGCACAGAAGCGCTTGCTCGAGGCTCCAGAACAGGATGCTCTGAACGGCGAGAGGAACCACCATGAGCAGTCAGAAGATGAATTGGAATCCGATCGAAGCCCTTCGTGGAGCCCTGGCGACAAAGAACAGTTTGTTGTTATAAAATTGTCAGATGTACGCAAGGAAGTTCAATGTCCTATCTGCCTAGGCATCATTCGAAAAACAAGAACTGTAATGGAATGCCTGCATCGCTTCTGCAGAGAGTGCATAGACAAATCTATGCGCCTTGGCAACAATGAATGCCCTGCATGCCGCACACATTGTGCTAGCCGACGCTCACTGAGGGATGACCCAAACTATGATGCTTTAATTGCTGCTCTCTATCCTGATGTAGACAAGTATGAGGAGGAGGAATTGGCTTTACATGAAGATGAGAAAGCTCGCAATAAGCAGATTCAAGCTTCTATTGCTCAGACTCTTCAACGACAAGCAGAAGCACTGGGTAAGAAACGTAATGCCAAAGCCACAGCAGCAGCTTTCGTGAGGAGGTCACAAAGTAACTATCGAACTTCCCAGGTAAGGGTAAGAAGAAATTGTAGAAGTGCAATTGAACTTCAGGGATCTGATGACACTGAGGATATGAATGATGATGATGGGGGTAAGGGTTCATCTTCTGGTGATGAGCTAGAAATCAAGTCCAAAAAATGCAAAAGAGGAGGAGAAGCGCAATTTCCTCTGCATTCTGCCACCACTGTTGCAGACGGTGCCAGTGATGAAAATGTTCCTGAAGTGAGTAAAGAATTCATAAGTCCATCTGGTACACTTGCCTGGGGAAAAAATGGCCACCGGAGTCACACCCGAGTCAATGGTAAGAATGCCAGAAACAGTCGCCTCTCCAAATTGGTTGATAATCTCCGTAGTTTGGAAGAAATTGATGATGAGTTGGATATCTGCCTCATGCTAGTGTCTTTTGATGAGAAAAGAATACCAAGTTTGCAGCAGCCATACCTTTGCTGCAGACCCACATTGTCTGTTAGGCACCTATGCCAGTATGTTGCTCTTCAAACAGCACTGCAGGCTGATGAAGTTGAGATATGCTTGGTAAAAGAGCAGCAAGCCAGAATATTTAGATCTGCAGGCATATTAGATCCATGCAAAGATAAGTTTCGAGTGTTGGGAGAGCAAGAAACTTTGGCTGAACTTAAAACTGATAACTTTACCTGTGGCCATTTGCTGATGGCATACAGGAGGAAGTTGTGGAACACAACCATGATTGGCTTGAGGTGA 1539 0.4613 MPINLFLVERQESRRPSGLPDPQGKNQVRDGAPSSAPALLISLSFSLCEGQGVKSRFATFVTIAITTTSHCLALCGYLSLARFLLLGKAMPAQKRLLEAPEQDALNGERNHHEQSEDELESDRSPSWSPGDKEQFVVIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDVDKYEEEELALHEDEKARNKQIQASIAQTLQRQAEALGKKRNAKATAAAFVRRSQSNYRTSQVRVRRNCRSAIELQGSDDTEDMNDDDGGKGSSSGDELEIKSKKCKRGGEAQFPLHSATTVADGASDENVPEVSKEFISPSGTLAWGKNGHRSHTRVNGKNARNSRLSKLVDNLRSLEEIDDELDICLMLVSFDEKRIPSLQQPYLCCRPTLSVRHLCQYVALQTALQADEVEICLVKEQQARIFRSAGILDPCKDKFRVLGEQETLAELKTDNFTCGHLLMAYRRKLWNTTMIGLR 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1159 512 MobiDBLite consensus disorder prediction 285 314 - -
Bisa07g1159 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 219 IPR013083 -
Bisa07g1159 512 ProSiteProfiles Zinc finger RING-type profile. 149 189 IPR001841 -
Bisa07g1159 512 MobiDBLite consensus disorder prediction 101 127 - -
Bisa07g1159 512 CDD RING-HC_RING1-like 146 211 - -
Bisa07g1159 512 SMART ring_2 149 188 IPR001841 -
Bisa07g1159 512 MobiDBLite consensus disorder prediction 11 32 - -
Bisa07g1159 512 Pfam Zinc finger, C3HC4 type (RING finger) 148 188 - -
Bisa07g1159 512 SUPERFAMILY RING/U-box 139 219 - -
Bisa07g1159 512 ProSitePatterns Zinc finger RING-type signature. 165 174 IPR017907 -
Bisa07g1159 512 MobiDBLite consensus disorder prediction 101 130 - -
Bisa07g1159 512 PANTHER OS11G0578200 PROTEIN 101 502 IPR044592 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1159 Bisa-ChrBisa07 29578549 29583191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1159 147 270 C3H Transcription Factor Family AT2G30580 30.000 2.36e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g1159 07 29578549 29583191 Bisa07g1159 07 29578549 29583191 CCT