Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1142 ATGGCTGATGAACAGCCGTCAACGGCCGCGAGAAGAAGGGGAAGAGGAGCCGAGGCATCGGCGCGTTCCGAAGCATTGGAACGCCTGAAAGCTCGACTTCGTGGTGGTCGCCGTTCAGATGGCGACGGATTCCAAATTAAGTTAGAAAACCCTATATATGATACGGTCGCTGAGGATGAGTACAATGTTCTCGTCGCCAAGCGCCGTGAAGAAGCCCGAGGCTTCATAGTTGACGATGATGGTCTTGGGTACGGAGACGAAGGCGAGGAGGAGGATTGGTCGAAAGCTGGGTTCACTTTGTCGTCTGATGAATCTGATGGTGAACCAGAAAAGCTCAAAAAGAAGAAAGTAGAAAAGAAAGATCCGCAACCTAAAAGGTCATCTTCTTCGCTCTCGGCTGCGGCAGCGATGATGGGGGCGCAGAGGTTGTCATCTATGTTCACTTCGTCAGTTTTTAAGAAAAGTAGGGATGATAAGGCTAAAGGATTTTCCTGTGATAGTATTGTTGACGATGTTATTGCGGAGTTTGCGCCGGATGAGACTGACAGACTCAGGCGTAGAAGGGGGCAAACAAACCCCTCATCTGGGGCAAATAACGCTCTGCCGATTAAAGTTAAAAGTGATGAACCATTAGTTGGATGTCCCGATCCAGTGGGAGTTGCTTTCTCGGCGGAAGCTGTTGCAAATGGCGATCTTGAATCGATAAAAGTTATTAAAAATGAAGGTTGTGCTTTGAGTTCTGAGAAAAACAATGGAGGAGCCAGAGAAGAACCATCTACTAAAGCATCAGATGATGGGATAAAGTTTAACTTCGCAAATGGCCAGGCATCAACCATGCAAAAACATGGTGATCTGACTAATGGAGATGTGATTGAAGAGAAAACGCTAAAGGATGTTGAAATAGAGGCTAAACACACAACGGAGAAAGAGGTCTTTACTCTGAATGCAAAAGTTAAGGAAGAGGGCCCAGCAATGAGTGCAACTTCTGGTTGGCAGGCAGCGAGGAGTGGAGGCGACACCAATGTCGCAGATTCGAAAGTGGCCACTGAAGCTTTGAATAGTGAAGAAAACTTGGAGTTCAATCTGGAGGCAGATGGGTCGCTGCCTTTTTACATACTTGATGCCTATGAGGAGTTCTATGGAGCTAATACGGGCAATCTATATTTGTTTGGGAAGGTCAAAACAGGTAATTCGTATCAGAGTTGCTGTGTTGTTGTGAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGTCAGCCCTTACGATACACTGATGAGATGATGAACCTTGAGAAGGATGCTGAAGAGTCCCGGATTTCTCCTATGAAATTTCAACAAAAGCTGCAAGATATGGTATCTGGTTTAAAGAATGAGATCGCAAAACAACTGTTAGATCTGAACGTTTCAACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGATCGATCTGAAATACCTGCCGGAGAAAATTATGTATTAAAAATCAACTATCCATTCAAGGATCCACCCCTTCCAGTAGACCTGAAAGGAGAGAGTTTCTGTGCCCTTCTAGGAACTCATTGCAGTGCACTGGAGCATTTTCTTATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACTGCTTTCAAACTATTCTACCTGCTTGGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAGGTGACTGTTGACTCTCCTAAAGATATAAATATTTCAACAACCTCAAAAATCAGTTTTGAGATTCCTTCTGTCGTTGTCACAGCTGTGAACTTGAAAACCACAATAAATGAAAAACAAAACTTGAACGAGATTGTCTCTGCTTCCATCGTTTGCTGCCGCAGGGTTAAGATTGACACTCCCATGTTGGCTTCAGAATGGAAGAGACCTGAAATGCTGACCCATTTTACTGTTGTTCGTAAGCTTGATGGAGGCATATTTCCTTTGGGATTTAGTAAGGAGGTTGCAGATCGAAACACAAATGCTGGCTCAAATGTTCTGTGTTTTGAAAGCAGTGAAAGAGCTTTGCTAAACCGCCTGATGATAGAATTACACAAGTTGGATAGCGATGTTCTTGTTGGACATAACATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATGCCAGGCTTGCAAAGTGCCAAGCAGCATGTGGTCTAAAATAGGCCGCCTGAAGCGGTCTGTGATGCCTAAACTTTCCAGAGTAAGCACTGTTTTTGGTTCTGGAGCTACCCCTGGGATCATGACTTGCATTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTGCTCGTGACCTATTAAAGGAGGTTAGCTACTCTTTATCTCAACTTGCAAAAACTCAGCTGAACAAAGTTCGGAAGGAAGTTGCTCCACATGATGTTTCAAAAATGTTCCAATCAGCAGAATCCCTTATGGAACTTATTGAATATGGTGAGACAGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAGCGTTCTCCCTCTCACACGTCAGCTGACTAATATTAGTGGTAATTTGTGGGGAAAGACTCTTCAGGGTGCAAGGGCACAGAGAGTGGAGTATCTTTTGTTGCATGCTTTTCATGCAAAGAAATATATTGTGCCGGACAAGATTCCTTCCCATGCAAAAGAAACAAAATTGACAAAACGCAGAGTAACTCATGGTGTGGAGGATGTCAACTTTGATGATGCAGATATTGATAATACAAACTATGACAATAATGCTCCCAACATTGATCAGGGGAAAAGCAAAAAGGCTCCCTCCTATGCTGGAGGACTGGTTTTGGAGCCAAAGAGGGGCTTATACGACAAATATATATTGCTTTTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACAATATCTGTTTTACAACTGTTGAAAGAACTTCAGATGGATCTTTCCCTCGTCTGCCATCTAGTAAAATAACTGGAGTTTTGCCAGAGTTGCTGAAAAATTTAGTTCAAAGGAGGAGAACGGTAAAGTCATGGATGAAGACTGCATCTGGTCTTAAAGTTCAACAATTCGACATTCAGCAACAAGCACTGAAGCTTACTGCAAACAGTATGTATGGATGCCTCGGATTTGCTAATTCAAGATTTTATGCAAAGCCACTAGCAGAGCTTATAACACTACAAGGAAGGGAGATACTACAAAATACTGTCGATCTTGTTCAGAATATCTTGAACTTAGAGGTGATCTATGGGGATACAGATTCAATAATGATTTATAGTGGGCTAGATGATATTGTGAAAGCAAAAGCAATGGCTGGAAAAGTTATTCAAGAGGTCAACAAGAAATATAGGTGCTTGGAAATTGATCTCGATGGTTTGTACAAGAGAATGCTACTTCTTAAGAAAAAGAAATATGCAGCTGTCAAGGTGCAGTTCAAAGATGGCATGCCATATGAGGTTATTGAACGTAAAGGGCTTGATATTGTTCGTCGTGACTGGAGCCTATTATCTAAAGATATAGGAGATTTTTGCCTAAGTCAAATTTTGTCAGGAGGGTCATGTGAGGACGTTGTTGAATCAATTCACAGCATTCTCCGGAAGGTTCAAGAAGAGATGAGGAGTGGACAAGTACCGCTAGAGAAATATATCATCACTAAGACATTGACAAAACCTCCTGAAGCCTATCCGGATGCCAAAAATCAACCGCATGTGCTGGTGGCACAGAGATTGAAGCAAAAGGGTTACTCCACTGGTTGCTCTGTTGGTGATACAATCCCCTATATAATTTGCTATGAACAGGGCAGTAGTTCAGGCAGTGCAACAAGCATTGCTCAGCGAGCTAGGTATCCTGATGAACTAAAACAAGAACAAGGGAAATGGATGATTGACATTGATTATTACTTGTCACAACAGATTCATCCCGTGGTATCACGTCTCTGTGCATCAATTCAGGGTACGAGCCCGGAAAGACTGGCAGATTGTTTAGGGCTTGATACATCAAAAGTAGAACTTCTTTCCTATTGTTTTCAACATAAATCTAGTGAAGCCTTCGGTGGTGATCCTTCAAGCTCACTCTTGTTTGCTGCTAATGATGAGGAGAGGTATCATGGATGTGAGGCGTTGGTCTTGTCATGTCCTAGCTGCTCTAGTACTTTTGACTGCCCATCTGTCTTTAAATCTATTTGCTCCTCTGGAAGTGAAAAGTCAACAAGCTTAGGCATGGCAGAGTCAAATTATAATTTCTGGCGTAAATTGCACTGTCCTAAATGCCCAGAAGAGGAAAACGTTGGCAGATTTTTTCCTGCAATGATAGCCAATCAGGTCAAAAGGCAAGTGGATAAGTTTATTTCATTGTACTACAGAGGCTTATTAATGTGCGATGATGAAACATGTAAGCATACAACACGAAGTATCAACCTTCGGCTGGTTGGTGATTCTGAAAGAGGAGCTGTTTGTCCAAATTATCCTCGCTGCAGTGGACATCTTCAAAGAAAGGTTTTACCCTACACGGAGGCAAACTTGTATAAACAGCTCTCATATTTTTGTCATGTACTGGATACTGTTTCCTGCATAGAGAAGATGGAGGCCAAGTCTAGGATAGCAGTAGAGAAAGAGTTGGCCAAAATTAGGCCAATGGTTGAACCGGCAGCATCAACAGCACAAGAGATTCGAGACCGTTGTGCCTATGGGTGGGTAAAACTGCCGGATATTGCCGTTTCTCTGTAA 4695 0.4262 MADEQPSTAARRRGRGAEASARSEALERLKARLRGGRRSDGDGFQIKLENPIYDTVAEDEYNVLVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESDGEPEKLKKKKVEKKDPQPKRSSSSLSAAAAMMGAQRLSSMFTSSVFKKSRDDKAKGFSCDSIVDDVIAEFAPDETDRLRRRRGQTNPSSGANNALPIKVKSDEPLVGCPDPVGVAFSAEAVANGDLESIKVIKNEGCALSSEKNNGGAREEPSTKASDDGIKFNFANGQASTMQKHGDLTNGDVIEEKTLKDVEIEAKHTTEKEVFTLNAKVKEEGPAMSATSGWQAARSGGDTNVADSKVATEALNSEENLEFNLEADGSLPFYILDAYEEFYGANTGNLYLFGKVKTGNSYQSCCVVVKNMQRCVYAIPSQPLRYTDEMMNLEKDAEESRISPMKFQQKLQDMVSGLKNEIAKQLLDLNVSTFSMAPVKRKYAFDRSEIPAGENYVLKINYPFKDPPLPVDLKGESFCALLGTHCSALEHFLIKRKIKGPSWLLLSNYSTCLASQRVSWCKFEVTVDSPKDINISTTSKISFEIPSVVVTAVNLKTTINEKQNLNEIVSASIVCCRRVKIDTPMLASEWKRPEMLTHFTVVRKLDGGIFPLGFSKEVADRNTNAGSNVLCFESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRCQACKVPSSMWSKIGRLKRSVMPKLSRVSTVFGSGATPGIMTCIAGRLLCDTYLCARDLLKEVSYSLSQLAKTQLNKVRKEVAPHDVSKMFQSAESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPSHAKETKLTKRRVTHGVEDVNFDDADIDNTNYDNNAPNIDQGKSKKAPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERTSDGSFPRLPSSKITGVLPELLKNLVQRRRTVKSWMKTASGLKVQQFDIQQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQNTVDLVQNILNLEVIYGDTDSIMIYSGLDDIVKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDIVRRDWSLLSKDIGDFCLSQILSGGSCEDVVESIHSILRKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQKGYSTGCSVGDTIPYIICYEQGSSSGSATSIAQRARYPDELKQEQGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDTSKVELLSYCFQHKSSEAFGGDPSSSLLFAANDEERYHGCEALVLSCPSCSSTFDCPSVFKSICSSGSEKSTSLGMAESNYNFWRKLHCPKCPEEENVGRFFPAMIANQVKRQVDKFISLYYRGLLMCDDETCKHTTRSINLRLVGDSERGAVCPNYPRCSGHLQRKVLPYTEANLYKQLSYFCHVLDTVSCIEKMEAKSRIAVEKELAKIRPMVEPAASTAQEIRDRCAYGWVKLPDIAVSL 1564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1142 1564 Gene3D - 583 894 IPR036397 GO:0003676
Bisa07g1142 1564 SUPERFAMILY DNA/RNA polymerases 867 1320 IPR043502 -
Bisa07g1142 1564 FunFam DNA polymerase 1149 1334 - -
Bisa07g1142 1564 Coils Coil 1099 1119 - -
Bisa07g1142 1564 ProSitePatterns DNA polymerase family B signature. 1073 1081 IPR017964 GO:0000166|GO:0003676
Bisa07g1142 1564 FunFam DNA polymerase 583 897 - -
Bisa07g1142 1564 MobiDBLite consensus disorder prediction 245 266 - -
Bisa07g1142 1564 FunFam DNA polymerase 983 1032 - -
Bisa07g1142 1564 CDD POLBc_alpha 918 1321 IPR045846 GO:0003887|GO:1902975
Bisa07g1142 1564 Gene3D - 410 536 - -
Bisa07g1142 1564 Gene3D - 1149 1319 IPR042087 -
Bisa07g1142 1564 FunFam DNA polymerase 410 536 - -
Bisa07g1142 1564 Pfam DNA polymerase family B 842 1305 IPR006134 GO:0000166|GO:0003677
Bisa07g1142 1564 MobiDBLite consensus disorder prediction 181 201 - -
Bisa07g1142 1564 MobiDBLite consensus disorder prediction 1 23 - -
Bisa07g1142 1564 FunFam DNA polymerase 1351 1550 - -
Bisa07g1142 1564 NCBIfam DNA polymerase (pol2) 51 1303 - -
Bisa07g1142 1564 MobiDBLite consensus disorder prediction 77 136 - -
Bisa07g1142 1564 Gene3D Palm domain of DNA polymerase 912 1136 IPR023211 -
Bisa07g1142 1564 Gene3D - 370 569 - -
Bisa07g1142 1564 PRINTS DNA-directed DNA-polymerase family B signature 942 955 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bisa07g1142 1564 PRINTS DNA-directed DNA-polymerase family B signature 1018 1030 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bisa07g1142 1564 PRINTS DNA-directed DNA-polymerase family B signature 1071 1079 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bisa07g1142 1564 Gene3D DNA Polymerase alpha, zinc finger 1352 1549 IPR038256 -
Bisa07g1142 1564 Pfam DNA Polymerase alpha zinc finger 1352 1560 IPR015088 GO:0003887|GO:0006260
Bisa07g1142 1564 Pfam DNA polymerase family B, exonuclease domain 399 777 IPR006133 -
Bisa07g1142 1564 CDD DNA_polB_alpha_exo 583 834 - -
Bisa07g1142 1564 Gene3D Helix hairpin bin 987 1031 - -
Bisa07g1142 1564 SUPERFAMILY Ribonuclease H-like 365 871 IPR012337 -
Bisa07g1142 1564 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1562 - -
Bisa07g1142 1564 SMART polmehr3 583 1085 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bisa07g1142 1564 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Bisa07g1142 1564 MobiDBLite consensus disorder prediction 104 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1142 Bisa-ChrBisa07 29205942 29218012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1142 1 1562 Core DNA Replication Machinery Family AT5G67100 60.264 0.0 1873