Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1052 ATGGATTTCTCGAAGAAGCGCAAAACCGAAGAGAATGGAAACACCGATTCCGAGCCACCCCCCTCCGCTACAACTCCTCTGAGCCCAGATGATATCCGCAAGATCCTCCAACCTTTTACCCAAGAACAGCTCCTTGAGCTGCTTCAATCAGCTGCTCTTCGTCACCCTGACGTTATCGAGTCTATTCGTACCGTTGCCGACCGCGACTCCACCCTTCGGAAACTCTTTGTTCGAGGGCTTGCTGGGGAAACCACGACTGAGACTCTCAGCAGTGTGTTCTCCTCCTTTGGGGGGCTTGATGAGGCGATCGTTATCTTTGACAAAACGACGGGGAAGTCCAAAGGTTATGGCTTCGTGACGTTCAAGCACGTTGATGGTGCTATACTGGCTTTGAAGGAGCCCAGCAAGAAACTTGACGGGAGAATGACGGTGACACAGCTTGCAGCTGCTGGGTTGTCGGGCAGTCAGGGGGCTAATGCGGCCGCCGGACCCACAAGTGATGTTTCTGCCAGAAAAATTTTTGTGGGTAATGTGCCTTTTGATATCTCATCGGAGAGGCTGTTGAATTACTTCTTAACGTACGGGGAAATCGAAGAAGGGCCCCTTGGATTTGACAAAAGTAATGGAAAGACTAAAGGTTTTGCATTCTTTGTATACAAAACGGAGGAGGGTGCAAGGGCGTCTCTAGTTGAGCCCGTCAAGACAATTGATGGGCATCAAGTGGTTTGCAAACTGGCCATGGATAACAAGAAGGGAAAGCCAGGAGGAGCTCCCAACCAGGTTCCGCCTGGGTTGCCGGGTAGTGGCATGGCGGCACACCAAACGCAACCATCCTTGCCTGGTTCTATGATGGGATCAAATTATGGAGGTCATGGCTCTTTATCATCATACGGAGGATTTGGCGGTGCGCACCAGGGCCCCATGACAGTGCCTGGTAATAATTACGGGTTGCATTCTTCATTGCCGTCATTTGGTACTCAGGTTCCATCTACCGTGACTCCTAATAGTGGTGGCGGGTATGGTCCAGGAATGGGTGGGGTGTATAGCGGTTCACAGTTCAATGGGCCAACTTCCGGTGATTATGGCGCTAGGATGCCTTCAATTTCTGCTGGAATGGCTTCTGGGGGATATCCCGATGTCCATGCCAATGCCCAGACTGGCTCCTGGAGGAATGTACCAAGGCATGCCGCCCTACTACTGAGGTGTTTGATTCAGGTTTGTGATGGCTTCTTGGGCGATAATGCTTTAAATGGTTGTGCTGATTTCGTGAATGCAGACAATGAAATCTTTGGTTTTGATTACATGGACTGCTGTGAATTTGTTGCTGCTTCACTACTTCTGCTTCTATTTGTTGTGGTTCCAATTGCCATTTGTGATGGGTGTTAG 1386 0.5014 MDFSKKRKTEENGNTDSEPPPSATTPLSPDDIRKILQPFTQEQLLELLQSAALRHPDVIESIRTVADRDSTLRKLFVRGLAGETTTETLSSVFSSFGGLDEAIVIFDKTTGKSKGYGFVTFKHVDGAILALKEPSKKLDGRMTVTQLAAAGLSGSQGANAAAGPTSDVSARKIFVGNVPFDISSERLLNYFLTYGEIEEGPLGFDKSNGKTKGFAFFVYKTEEGARASLVEPVKTIDGHQVVCKLAMDNKKGKPGGAPNQVPPGLPGSGMAAHQTQPSLPGSMMGSNYGGHGSLSSYGGFGGAHQGPMTVPGNNYGLHSSLPSFGTQVPSTVTPNSGGGYGPGMGGVYSGSQFNGPTSGDYGARMPSISAGMASGGYPDVHANAQTGSWRNVPRHAALLLRCLIQVCDGFLGDNALNGCADFVNADNEIFGFDYMDCCEFVAASLLLLLFVVVPIAICDGC 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1052 461 PANTHER GEO13361P1-RELATED 56 317 - -
Bisa07g1052 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 254 IPR000504 GO:0003723
Bisa07g1052 461 SUPERFAMILY RNA-binding domain, RBD 64 151 IPR035979 GO:0003676
Bisa07g1052 461 MobiDBLite consensus disorder prediction 249 282 - -
Bisa07g1052 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 239 IPR000504 GO:0003723
Bisa07g1052 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 141 IPR000504 GO:0003723
Bisa07g1052 461 MobiDBLite consensus disorder prediction 1 29 - -
Bisa07g1052 461 Gene3D - 164 276 IPR012677 -
Bisa07g1052 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Bisa07g1052 461 SMART rrm1_1 172 244 IPR000504 GO:0003723
Bisa07g1052 461 SMART rrm1_1 74 146 IPR000504 GO:0003723
Bisa07g1052 461 Gene3D - 63 151 IPR012677 -
Bisa07g1052 461 SUPERFAMILY RNA-binding domain, RBD 164 257 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1052 Bisa-ChrBisa07 26525205 26527928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1052 167 350 C2H2 Transcription Factor Family AT2G19380 31.707 6.16e-17 81.6