Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0940 ATGGCTTTCCCGAACCCATCCATGTCAGTCTCACCCCAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAATCGCCAAGTCACCTTCTGCAAACGCAGAAATGGCCTCCTCAAGAAGGCTTATGAACTGTCTGTGCTTTGTGATGCAGAGGTGGCTTTAATCGTCTTCTCTACCCGTGGACGCCTCTATGAATATGCTAATAACAGATCTGGTGCAATAGATGGAAATAGAGGCTCAACAGAGTTTTCAGGTGGGGTTATCGAGGTGGAGAAAAGGATTAACTTTAGGGTATGCTGTATTGTCCAAGTGTTAATGGTTTCCGCCAAGTGGCAGAGAGAAAAGGGCCTAGAAATGGTTGAACCAATCATATTGTGGGAACCCGTGCCAGCGTGGCAGGGGCAGCCAATCAGTGCGTCGAGGAAATTAAGTGTGAAAGCAACTATTGAGAGGTACAAGAAAGCATGTTCAGATTCTACAGGTGGATCTACTTCTGAGGTTAATGCTCAGTATTACCAGCAAGAAGCCGCCAAACTGCGTGCACAGATTAGTAACCTCCAGAATCACAACAGGCAAATGATGGGTGAAGGTTTGGGGAATCTGGGAGCCAAGGAACTCAAAAACCTGGAGAATAGGTTAGAAAAAGGGATTAGCAGAATTCGTTCCAAAAAGAACGAGCTGCTATTTGCAGAGATTGAGTACATGCAGAAGAGGGAAATTGACCTACACAACAACAACCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAAGGGCGGGAGCAAAACATGAGTTTGGTGGGTGGAGGAGGCACAAACTACGAGTCGATGCAATCTCAGGCTGAGCAGCACCAATTTGAAAATCGAGGTTACTTCCAAGTCACTGCTTTACAACCCAATCATCACTATCCTCGCCAAGATCACATGGCCATTCAATTAGTAGTGTAG 963 0.4611 MAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNRSGAIDGNRGSTEFSGGVIEVEKRINFRVCCIVQVLMVSAKWQREKGLEMVEPIILWEPVPAWQGQPISASRKLSVKATIERYKKACSDSTGGSTSEVNAQYYQQEAAKLRAQISNLQNHNRQMMGEGLGNLGAKELKNLENRLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESEGREQNMSLVGGGGTNYESMQSQAEQHQFENRGYFQVTALQPNHHYPRQDHMAIQLVV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0940 320 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Bisa07g0940 320 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Bisa07g0940 320 CDD MADS_MEF2_like 17 75 IPR033896 GO:0000977|GO:0045944
Bisa07g0940 320 SUPERFAMILY SRF-like 17 76 IPR036879 GO:0003677|GO:0046983
Bisa07g0940 320 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Bisa07g0940 320 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 278 - -
Bisa07g0940 320 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Bisa07g0940 320 Coils Coil 175 202 - -
Bisa07g0940 320 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Bisa07g0940 320 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Bisa07g0940 320 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Bisa07g0940 320 Coils Coil 212 232 - -
Bisa07g0940 320 FunFam MADS-box transcription factor 21 28 90 - -
Bisa07g0940 320 ProSiteProfiles K-box domain profile. 175 265 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa07g0940 320 Gene3D - 28 86 IPR036879 GO:0003677|GO:0046983
Bisa07g0940 320 Pfam K-box region 172 259 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0940 Bisa-ChrBisa07 24057328 24063347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0940 7 75 MADS-box Gene Family AT3G58780 85.507 6.50e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa07g0940 K-box 6.8e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g0940 07 24057328 24063347 Bisa07g0940 07 24057328 24063347 ECH