LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g0881	ATGAATTGCCTCCCCTGTTTGCGCTCTCGCAAAAGTAAGAAATGCCTTAGTAACGTGGAGCGTGGTTCCGAACCACTTGACAACATTCCATGTACAACGCAAGAGACCACCAAACAAACGGCAGGAAACCCAGAACAAGTTGATCCCAAGAGTATTCAAGCGCAATGTTTAACTTTCCGAGAGGTAGCAATAGCGACCAAAAATTTTCGTCAGGAATGTCTCTTGGGTGAAGGTAGCTTTGGAAGAGTCTACAAAGGCACGCTCAAAACTGGGCAGGTGGTGGCTGTGAAGCAACTCGATAGAAATGGGATGCAAGGTAATAAGGAGTTTCTGGTTGAGGTTTCGATGCTGAGTCAGTTGCAACATGAGAATCTAGTCAATCTCATTGGGTATTGTGCCGATGGAGATCAACGTCTTTTGGTCCATGAATTCGTCAAGGGAGGTTCCCTAGAACAACATCTTCTAGAGAAGGGATCACATAAGCGTCCATTGGATTGGTTAACTAGAGTGAAAATTGCATGGTATACAGCAAAAGGACTAGAGTACTTGCATGACAAGGCCAATCCTCCAGTCATATTCAGAGACCTGAAATCCTCAAACATTTTGCTGGACGGTGATTTCAACCCCAAGCTCTCAGATTTTGGACTGGCCAAGCTTGCTGGGAGAGACAAGGCCAACTCTGCACCTTCTAGAGTTGTGGGTACATATGGACACTCTGCTCCAGAGTATGTAAGCACAGGTAACCTCACATTCAAATCAGATGTGTACAGCTTCGGAGTTGTCTTGCTAGAGCTCATAACTGGACGAAGAGCTGTTGACACTACTAGACCAGGCCACGAGCAAAACCTAGTTTCATGGGCACAACCCATATTCAAAGACCCCAAAAGATTCCCGGACATGGCAGATCCAACTCTGGAGAGGAATTTCCCAGAAAAGGATCTGAATCAAGTGGTTGCAATTGCAGCCATGTGTCTGCAGGAGGAAGCAGGAGCTCGTCCTTTGATGAGTGACGTTGTGACTGCTCTTAGTTTCCTTTCTATGATTCCTTCTGCATCTGGTACTCCCAATGGCTAG	1074	0.4618	MNCLPCLRSRKSKKCLSNVERGSEPLDNIPCTTQETTKQTAGNPEQVDPKSIQAQCLTFREVAIATKNFRQECLLGEGSFGRVYKGTLKTGQVVAVKQLDRNGMQGNKEFLVEVSMLSQLQHENLVNLIGYCADGDQRLLVHEFVKGGSLEQHLLEKGSHKRPLDWLTRVKIAWYTAKGLEYLHDKANPPVIFRDLKSSNILLDGDFNPKLSDFGLAKLAGRDKANSAPSRVVGTYGHSAPEYVSTGNLTFKSDVYSFGVVLLELITGRRAVDTTRPGHEQNLVSWAQPIFKDPKRFPDMADPTLERNFPEKDLNQVVAIAAMCLQEEAGARPLMSDVVTALSFLSMIPSASGTPNG	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g0881	357	PANTHER	OS07G0668900 PROTEIN	34	348	-	-
	Bisa07g0881	357	Gene3D	Transferase(Phosphotransferase) domain 1	145	349	-	-
	Bisa07g0881	357	MobiDBLite	consensus disorder prediction	27	46	-	-
	Bisa07g0881	357	SMART	serkin_6	69	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g0881	357	MobiDBLite	consensus disorder prediction	26	46	-	-
	Bisa07g0881	357	Pfam	Protein kinase domain	71	339	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g0881	357	ProSitePatterns	Protein kinases ATP-binding region signature.	75	97	IPR017441	GO:0005524
	Bisa07g0881	357	SUPERFAMILY	Protein kinase-like (PK-like)	48	346	IPR011009	-
	Bisa07g0881	357	FunFam	Serine/threonine-protein kinase PBS1	145	355	-	-
	Bisa07g0881	357	Gene3D	Phosphorylase Kinase; domain 1	31	144	-	-
	Bisa07g0881	357	ProSiteProfiles	Protein kinase domain profile.	69	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g0881	357	CDD	STKc_IRAK	75	342	-	-
	Bisa07g0881	357	FunFam	probable serine/threonine-protein kinase RLCKVII	41	144	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g0881	Bisa-ChrBisa07	22700156	22702393	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g0881	1	352	Glycoside Hydrolase	AT3G07070	62.740	3.83e-160	453

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Bisa07g0881		Pkinase	6.8e-49	CL0016