Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0864 ATGTCTGACGCCGAAAATTACGCTTCTTATAAAAATGGCGATCGTCGTGGTTCATCGCCTGACGGTGGCTACCGCGACAAGTCCAATTCTCATCGATCTAATCACGAGAGGCTCAGGACAAGAAACCGGGATGGAGAGAGAAAAACATTTCATGAGCACCATCGCAAGGCCTATAAGGATGGAGGCTCTAGAGGAAGGGACAAATATGACAATTATAATCGTCATCAGACCCATCATTATGACAGGCGTCAAGGTCATGTTCCAGATGGAGAAATGAGGCACAAATATGGAACACAATCAAGTTTCAAATCCAAGAGGGAATCTAGATCTCGCTCCAGATCCCCTTCTCGTTCAGAAAGCAAGAGGACCAGTGGTTTTGACATGGCACCACCTGCTGTTTCAGCTAATAGCGCAGGGCAAATGCTGGGGATGACTCAACCAGGACCTGTGCAAAATTTGCCACCAGCTGGGATGTCACAGCTTGGAGCACTTGCCTTCATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGACATGCACGGCGAGTTTACGTTGGTGGGCTCCCCCCTTTGACTAATGAGCAGGCAATTGCGGCATTCTTCAGCCATGTTATGACTGCTATTGGGGGGAAATCTGCTGGTGCAGGTGATTCTGTTGTCAATGTCTACATTAATCATGAGAAGAAATTTGCATTTGTGGAGATGAGAACTGTTGAAGAAGCTAGTAATGCAATGGCATTAGATGGAATTATATTTGAGGGTGTTGCTGTGCGGATTCGTAGGCCTACAGACTATAATCCTTCATTAGCTGCAGCCCTAGGTCCCAGCCAACCAAGTCCACACCTGAACTTATCTGCTGTTGGGCTTGTTGCAGGTTCATTTGGTGGAACTGATGGACCTGACCGCATCTTTGTGGGTGGACTACCATACTACTTAACTGAAGAACAAATAAAAGAATTGCTCCAAGCTTTTGGACCTCTTAGAGCTTTTGATCTAGTTAGAGATAAAGACACAGGAAATTCTAAAGGATATGGTTTCTGCATCTATGAGGATCCTGCTGTAACAGACCTTGCTTGTGCCTCTCTCAGTGGCCTTAAAATGGGTGACAAAACACTAACTGTTCGGCGGGCCACAGTCAGTTGGCAGTCTAAAACAGAACAGGAGTATATCTTTGCACAGGCACAACAGCATATAGCTATGCAGAAAGTAGCCCTGGACATTGGTGGATTGAATATTCCAGGAGTGGAGAGAGCACCGACTATGCATGATGAAAATGCCACTAAAGTTTTATGCTTAAGTGAGGCCGTTACTGTCGATCAACTGAGGGATGATGAAGAGTATAGAGAAATATTGGAAGACATGAGAGATGAATGCTGCAAATTTGGGACCTTGATCAATGTTGTCATTCCTCGTCCAAATCACATTGGAGAGACGGCCCCAGGTGTTGGAAAGGTGTTCTTGGAATACTCTGATAATTTTGGTTGTTCCACTGCAAAAACTGCACTAAATGGGAGGAGATTCGGAGGCAATGTTGTAAATGCCTATTATTATTCGGAAGAAAAATATCTTTGTTTGGAGTACGATGTATAA 1590 0.4478 MSDAENYASYKNGDRRGSSPDGGYRDKSNSHRSNHERLRTRNRDGERKTFHEHHRKAYKDGGSRGRDKYDNYNRHQTHHYDRRQGHVPDGEMRHKYGTQSSFKSKRESRSRSRSPSRSESKRTSGFDMAPPAVSANSAGQMLGMTQPGPVQNLPPAGMSQLGALAFMSVQPMMQQATRHARRVYVGGLPPLTNEQAIAAFFSHVMTAIGGKSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRIRRPTDYNPSLAAALGPSQPSPHLNLSAVGLVAGSFGGTDGPDRIFVGGLPYYLTEEQIKELLQAFGPLRAFDLVRDKDTGNSKGYGFCIYEDPAVTDLACASLSGLKMGDKTLTVRRATVSWQSKTEQEYIFAQAQQHIAMQKVALDIGGLNIPGVERAPTMHDENATKVLCLSEAVTVDQLRDDEEYREILEDMRDECCKFGTLINVVIPRPNHIGETAPGVGKVFLEYSDNFGCSTAKTALNGRRFGGNVVNAYYYSEEKYLCLEYDV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0864 529 FunFam U2 snRNP auxiliary factor large subunit 176 277 - -
Bisa07g0864 529 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 25 524 IPR006529 GO:0003723|GO:0005634|GO:0006397
Bisa07g0864 529 Gene3D - 423 527 IPR012677 -
Bisa07g0864 529 MobiDBLite consensus disorder prediction 1 155 - -
Bisa07g0864 529 SUPERFAMILY RNA-binding domain, RBD 302 519 IPR035979 GO:0003676
Bisa07g0864 529 SUPERFAMILY RNA-binding domain, RBD 175 260 IPR035979 GO:0003676
Bisa07g0864 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 372 IPR000504 GO:0003723
Bisa07g0864 529 FunFam U2 snRNP auxiliary factor large subunit 278 390 - -
Bisa07g0864 529 SMART rrm1_1 302 375 IPR000504 GO:0003723
Bisa07g0864 529 SMART rrm1_1 182 260 IPR000504 GO:0003723
Bisa07g0864 529 SMART rrm1_1 435 515 IPR000504 GO:0003723
Bisa07g0864 529 CDD RRM2_U2AF65 301 377 - -
Bisa07g0864 529 CDD RRM1_U2AF65 180 262 - -
Bisa07g0864 529 PANTHER RNA-BINDING PROTEIN 15 523 - -
Bisa07g0864 529 MobiDBLite consensus disorder prediction 18 120 - -
Bisa07g0864 529 CDD RRM3_U2AF65 427 512 - -
Bisa07g0864 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 264 IPR000504 GO:0003723
Bisa07g0864 529 FunFam U2 snRNP auxiliary factor large subunit 424 528 - -
Bisa07g0864 529 Gene3D - 294 397 IPR012677 -
Bisa07g0864 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 379 IPR000504 GO:0003723
Bisa07g0864 529 Gene3D - 176 277 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0864 Bisa-ChrBisa07 22238394 22246876 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0864 303 388 Eukaryotic Initiation Factors Gene Family AT1G71770 26.744 3.29e-06 48.1