Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0823 ATGGCGGACGAGGGATTCGATTACTCGGAACTGACTGACGGAGATGCCGATGATAAGTTTTTTATAGATCTTGACACCGTTATGAATGTTCTTGATGAGGATTGCGATCCTTCGGAGAGTAGTCCTGAGGGTTCTTCACAAAAAAATTTATCACCTGGTGAATCCAGCATCCATGATAATTTTCAGCTTCAAAGTGGCAATTCTTTGATTGACTGTGATAATGAAAATCGAGGACCTCCTTCACAGACTTTTTCTTCCTCACATGCTGTCCTTGGTCGTCTTCGGCACTTGGATCCTCTGGCCGAAAGTAATGAAATTTGCTACACAGAAAGGGAGGGAGTTTCAGGATGTGAGATACCTGTTCATACTATGGAACCTAGTTACCCTGAGACACATTTCAACTCTAAACCAGTTTCTGGAGATAATTTGAATTCTATCTGGAAGGGAGAAAATGAGAGCCAGTTCAAGCATATGGTAGAGGATGTTGAATCTGACTATGCTTCATATAGCCCTTTTGTTGAGAATGGTGATGTAAATCTTGCACATTATGTTTTTAATGAAGATATGATTGAAGGAGTTTCTGGGCAACAGGAAAATGACTCATGTACATCTTTTGAAATATCATTTATGGATGCTGATACTGGTTCCCATATTGCAACTTCGACCAATTCTACCATTTGCCAAGGTTCCGATATCCTTGGTGATTATAGTGACTACTTTTCATCCTTGCGTAGTTGTAAGGGTGCAGATGATAGACCTTTAGTTGCCGACTTGTCTCTTGGTTATATGCCAAATATTTTTAGTTCTCAATTTTGGACGAGTCAAGAAATAATAGATAATGTGAAGGCTGAAAATGTGGAAAGTTTAGCTGATACATCACGAGTGAGTAGTAACATGCATTCCAGTTCTACGAGTGGAATACCTTTTCAAGATAATCAATTTCTGTCAGCAGATAGTGAATTTTCTTCATTTTTTCCTGGTAATGCTTCCTACTTGCCAAGTGAAGACCGTGCAATCTGTGTCAAAGGTGAAAGAGATGAAATGATTGCTCCTTACCAGAACTCTCCTTACAGTGATTACACTGAGTATAATGTAGGCCAAGAGATGAAACAGATAAATAGTGCTTTTCCTTCAACTGGATGTCATAGTTATAATTCGTTTAGGTGTGAAGATAAAGATACAAATATGTTATCCAACATGCCTCATCATTTTCAAGAAGTGATTGATGGTACTGCTTGTAAATTTCCAGGAGAGACAGTCAGTTTGAATTTACAAGCATTAGACAAATATTTGCCCCATGCCCAGGCATCAATTGCTAGTGAGAAGCAGTTTTGTTCTGTTAAGAGTGAAGGAGAAGGAAAAGTGAACCAATGTAGAAGTCTTGATTCTCATATATCTAAAGGAAGCAGAGAATTGGTTCGAAGAGATTTCTTAGACAAATCCCCTCTTGAGGATGATGACCCTGATGTCTGCATTATTGAAGACATCAGTCATCCTGCACCAACAAGTCGATCAGAAGACCTCGGGAATTCTTGTAATATATCACAAAATCATGCATATAGTGATTCACAACCTTACATGTCTAGAGGCACAAGGCTGAAGACAAGTGATGAGCAATATATATTACGAGTTGCATTGCAAGATCTATCTCAGCCCAAGTCAGAAGTTATACCTCCCGATGGATTGATGGCTGTTCCTCTATTAAGACATCAGAGAATTGCCTTGTCATGGATGGTTCAAAAGGAAACATCAAGTTTATACTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACGGTGTCAACAATTGCCTTGATACTAAAGGAAAGACCTCCGACACTAATCGCTTGCCACAGTGCACAAAAATGTGAATTAGAAACTTTGAATCTTGATGTGGATGATGATGTTCTTGCTGAGAGTGGTGGAGTGAAGAAAGTAGCTAATATGGATCAGGATATTTCAAGTGTATGTCCAAACAAGAATTTGTTGATGCAAACAAAGGGAAGGCCATCTGCAGGAACACTTATTGTTTGTCCCACTAGTGTCCTACGGCAATGGTCTGAAGAGTTGCAAAATAAGGTAACCAGCAAAGCAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGAACCAAAGATCCTCATGAGCTGGCCAAATATGATGTTGTTCTGACGACTTATTCAATTGTTAGCATGGAGGTACCTAAGCAGCCTCTGGTTGACAAAGATGAAGAGAAAGGAAACTCTGAAATCCATGCTGATATACCGCCTAGTAAGAAAAGGAAATGCCCTTCTAGTTCTAGTAAAAGTGGCAAGAAGGGATTAGACAGTGCACTGCTTGAGGCTGCTGCTCGCCCTCTAGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCCCAGAGCATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCAAAGCGTAGATGGTGCTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTCAGATTTCTCAGATACGACCCTTATGCTGTTTATACAACGTTCTGTTCTACAATTAAGATTCCAATCAACAGAAATCCAAACAAAGGATATAGAAAGCTACAAGCTGTCTTAAAGACGATAATGTTACGTCGCACTAAAGGAACACTTCTTGATGGAGAACCTATTATTAACTTGCCACCTAAATTTGTAGAGCTGAAAAAGGTAGATTTTTCAACGGAGGAGCGTGATTTCTATTCCAGACTGGAGGCTGATTCTCGTGCGCAGTTTCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGTTGATGCTCTTGCGCCTTCGACAAGCTTGTGATCACCCTCTACTTGTTAAGCACTACAATTCTAACTCTTTATGGAAATCTTCAGTTGAGATGGCAAAGAAACTTCCTCGAGAAAAACAAATGTCACTTATGAAATATTTAGAGGCTTCATTGGCTCTCTGTGGCATCTGTAATGATCCTCCGGAAGATGCTGTCGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTCTGAACATCTTACTGGTGATGACAATCAGTGCCCTGTTACAAATTGCAAAGCTCGACTGAGCATGTCTTCAGTGTTTTCCAAAGCCACGTTGAGCTGTTCTCTTTCTGACAAGGCTAATGATGGTTTGTTTGGGTGCTCTGATCCTGAAGTGGAGGGATATGAGCCTTGTTCTCAGAGTCAGCCGTCTGATTCATCAAAAATTAAGGCTGCTCTTGAGGTGTTGAATTCATTATGTAAACCACAGGGTCATGCATCAAAAAATATATCTATGCAGATCAATTCTGAGGAACAGAGTGACTGCACTGGGAATGCCTCCGATACCAACAAGGTGAAATCTTCCAATGATTTTTCGGAGAGTCAAGAAATGTCTGGGGATGGAAGCTCTAATGATTCGATTGTTGTTAGAGAGAAAGCTATCGTGTTTTCTCAGTGGACAAGGATGTTAGATTTGCTTGAAGCATGTCTTAAGAATTCATCGATTCAGTACAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAATACTCTCCCAGAGGTAACAGTTATGATTATGTCTTTGAAAGCTGCCAGTCTTGGTCTCAACATGGTAGCAGCCTGCCATGTACTTCTGCTTGATCTATGGTGGAATCCTACGACTGAAGATCAAGCAATAGACAGAGCACATCGAATTGGGCAGACTCGCCCTGTAACTGTTTTGCGGTTAACTGTGAGAGATACAGTTGAAGATCGTATTTTAGCTCTACAGCAAAAGAAGCGGAAGATGGTTGCATCTGCATTTGGAGAAGATGGAACTGGCGGTCGTCAAAGTCGCCTCACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3960 0.4058 MADEGFDYSELTDGDADDKFFIDLDTVMNVLDEDCDPSESSPEGSSQKNLSPGESSIHDNFQLQSGNSLIDCDNENRGPPSQTFSSSHAVLGRLRHLDPLAESNEICYTEREGVSGCEIPVHTMEPSYPETHFNSKPVSGDNLNSIWKGENESQFKHMVEDVESDYASYSPFVENGDVNLAHYVFNEDMIEGVSGQQENDSCTSFEISFMDADTGSHIATSTNSTICQGSDILGDYSDYFSSLRSCKGADDRPLVADLSLGYMPNIFSSQFWTSQEIIDNVKAENVESLADTSRVSSNMHSSSTSGIPFQDNQFLSADSEFSSFFPGNASYLPSEDRAICVKGERDEMIAPYQNSPYSDYTEYNVGQEMKQINSAFPSTGCHSYNSFRCEDKDTNMLSNMPHHFQEVIDGTACKFPGETVSLNLQALDKYLPHAQASIASEKQFCSVKSEGEGKVNQCRSLDSHISKGSRELVRRDFLDKSPLEDDDPDVCIIEDISHPAPTSRSEDLGNSCNISQNHAYSDSQPYMSRGTRLKTSDEQYILRVALQDLSQPKSEVIPPDGLMAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPTLIACHSAQKCELETLNLDVDDDVLAESGGVKKVANMDQDISSVCPNKNLLMQTKGRPSAGTLIVCPTSVLRQWSEELQNKVTSKANLSVLVYHGSNRTKDPHELAKYDVVLTTYSIVSMEVPKQPLVDKDEEKGNSEIHADIPPSKKRKCPSSSSKSGKKGLDSALLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTTFCSTIKIPINRNPNKGYRKLQAVLKTIMLRRTKGTLLDGEPIINLPPKFVELKKVDFSTEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKHYNSNSLWKSSVEMAKKLPREKQMSLMKYLEASLALCGICNDPPEDAVVSVCGHVFCNQCISEHLTGDDNQCPVTNCKARLSMSSVFSKATLSCSLSDKANDGLFGCSDPEVEGYEPCSQSQPSDSSKIKAALEVLNSLCKPQGHASKNISMQINSEEQSDCTGNASDTNKVKSSNDFSESQEMSGDGSSNDSIVVREKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0823 1319 SMART helicmild6 1178 1261 IPR001650 -
Bisa07g0823 1319 MobiDBLite consensus disorder prediction 33 86 - -
Bisa07g0823 1319 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 770 900 - -
Bisa07g0823 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 987 1052 IPR013083 -
Bisa07g0823 1319 ProSitePatterns Zinc finger RING-type signature. 1019 1028 IPR017907 -
Bisa07g0823 1319 SUPERFAMILY RING/U-box 1001 1047 - -
Bisa07g0823 1319 Gene3D - 535 625 IPR038718 -
Bisa07g0823 1319 SMART ring_2 1004 1042 IPR001841 -
Bisa07g0823 1319 Gene3D - 647 749 IPR038718 -
Bisa07g0823 1319 CDD DEXDc_SHPRH-like 567 888 - -
Bisa07g0823 1319 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 332 1318 - -
Bisa07g0823 1319 SMART ultradead3 563 865 IPR014001 -
Bisa07g0823 1319 MobiDBLite consensus disorder prediction 1121 1158 - -
Bisa07g0823 1319 MobiDBLite consensus disorder prediction 741 762 - -
Bisa07g0823 1319 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1157 1314 IPR001650 -
Bisa07g0823 1319 Pfam SNF2-related domain 587 965 IPR000330 GO:0005524|GO:0140658
Bisa07g0823 1319 CDD SF2_C_SNF 1164 1271 - -
Bisa07g0823 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 896 1318 IPR027417 -
Bisa07g0823 1319 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 582 850 IPR014001 -
Bisa07g0823 1319 ProSiteProfiles Zinc finger RING-type profile. 1004 1043 IPR001841 -
Bisa07g0823 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 552 888 IPR027417 -
Bisa07g0823 1319 MobiDBLite consensus disorder prediction 741 776 - -
Bisa07g0823 1319 Pfam Zinc finger, C3HC4 type (RING finger) 1004 1041 - -
Bisa07g0823 1319 Gene3D - 1053 1318 IPR027417 -
Bisa07g0823 1319 Gene3D - 775 900 IPR038718 -
Bisa07g0823 1319 Pfam Helicase conserved C-terminal domain 1162 1261 IPR001650 -
Bisa07g0823 1319 MobiDBLite consensus disorder prediction 40 86 - -
Bisa07g0823 1319 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 661 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0823 Bisa-ChrBisa07 21321152 21330386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0823 450 1318 RAD5 or RAD16-like Gene Family AT1G61140 60.314 0.0 983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa07g0823 SNF2_N 5.8e-70 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g0823 07 21321152 21330386 Bisa07g0823 07 21321152 21330386 CCT