Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0683 ATGGGAAGAGGGAAGATTGCGATTCAAAGGATCGAGAATTCGACGAGCAGACAAGTGACTTTTTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCCAAGGAGTTATCAGTTCTCTGTGATGCTGAAGTAGGATTGATCGTGTTCTCCAGCACAGGGAAGCTTTACGACTATGCAAGCACCAGCATGAGATCGGTTATTGAGCAGTACAACAAGCTTAAAGAGGAACATCTCATGCTTATGAATCCTGCTTCTGAACTCAAGTTTTGGCAGAGAGAAGCAGCAAGCTTGAGGCAACAACTGCATTACTTGCAAGAATGCCACAGGCAATTGATGGGTGAAGAACTTTCTGGTTTGTGCATTAAAGAACTACAAAATCTGGAAAACCAATTGGAGATGAGTTTGAAGGGTGTCCGCATAAAAAAGGATCAAATTTTGACTGATGAGATTAAAGAATTACACCAAAAGGGAAATCTCATTCATGAAGAAAATGCACAACTCCATAGAAAGATAGAAATCATCAGCAAAGAAAATGCAGAACTGAAAATGAAGGTTAATGATGCAGGCAACAAGAATCAAGAAAATGAGACATTCAATCCTTCAAACACTATCAGCAATGGATATGACATACATGCACCTATCTGTCTCAGGCTAAGCCAGCCACTGCCCCAATACAGTGAACAACGAGCCAAAACAATGAAACTGGGGAACTGTTCTATTCAGCAGTATCATCATTTATGGTACGAGATGTTCCATCAAGAATCACTAGCTGCAATTAAGGATAAGACACACCAGCTACCTTGTAAATTTTATGCAACAATGGTTTCATCAGATGTTCCTGCTGTTAATTTATACAATATCTACATCTGTATGCAGAGCAGAAATATGAAGGGATACAAGAGTCTCAAGTCTCAACTATATGATCCATCAGGCCTGGATGGCTATAAAGCTCTATCCCTTAGAGAAGCCGAGTTCAAGTGGATGCAGCACATGAACACAGCAAAGAGATGA 1008 0.4018 MGRGKIAIQRIENSTSRQVTFSKRRNGLLKKAKELSVLCDAEVGLIVFSSTGKLYDYASTSMRSVIEQYNKLKEEHLMLMNPASELKFWQREAASLRQQLHYLQECHRQLMGEELSGLCIKELQNLENQLEMSLKGVRIKKDQILTDEIKELHQKGNLIHEENAQLHRKIEIISKENAELKMKVNDAGNKNQENETFNPSNTISNGYDIHAPICLRLSQPLPQYSEQRAKTMKLGNCSIQQYHHLWYEMFHQESLAAIKDKTHQLPCKFYATMVSSDVPAVNLYNIYICMQSRNMKGYKSLKSQLYDPSGLDGYKALSLREAEFKWMQHMNTAKR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0683 335 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa07g0683 335 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa07g0683 335 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 189 - -
Bisa07g0683 335 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa07g0683 335 Coils Coil 120 140 - -
Bisa07g0683 335 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa07g0683 335 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa07g0683 335 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa07g0683 335 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa07g0683 335 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa07g0683 335 Coils Coil 163 190 - -
Bisa07g0683 335 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Bisa07g0683 335 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa07g0683 335 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Bisa07g0683 335 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bisa07g0683 335 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0683 Bisa-ChrBisa07 17956077 17987783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0683 1 237 MADS-box Gene Family AT2G14210 60.833 8.33e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa07g0683 K-box 9.9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g0683 07 17956077 17987783 Bisa07g0683 07 17956077 17987783 CCT