Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0636 ATGTCTGAATTCGAAGCCTCCCGCTCTGAGAAGAAGAAGAAGAAGCACCGAAACAAAGATGAAAGTGAAACCCCTGACATTGCTGACACTGACTTCATGATCAAACCCCAGAGCTTCACCCCATCCGTTGACACCTCCCAGTGGCCGATTCTCCTCAAGAACTACGACCGCCTCAATGTGCGAACGGGACACTACACTCCCATTCCCTCCGGTTACTCCCCCCTCAAGCGGCCTCTTCCCGAGTACATCAAGTACGGTGTCATGAATCTTGATAAACCCGCGAACCCGTCTTCCCACGAGGTCGTTGCCTGGATCAAGCGGATCCTCCGTGTTGAGAAAACGGGTCACAGCGGCACCCTTGATCCCAAGGTCACTGGGAACCTCATAGTTTGCATCGATAGAGCGACTCGTTTGGTGAAATCGCAGCAGGGTGCTGGGAAAGAGTACGTCTGTGTCGCTCGCTTGCACTCTGCCGTGCCGGAGGTCGCGAAGGTGTCTCGTGCACTCGAGACGCTTACCGGAGCTGTGTTTCAGCGACCGCCGTTGATTTCCGCGGTGAAGAGGCAGCTTAGGATCAGGACAATATATGAGAGTAAGCTTCTTGAGTATGACCCTGATAACCATTTGGTTGTTTTTTGGATTTCCTGTGAGGCAGGGACGTATGTGAGAACCCTGTGTGTTCATTTGGGGTTGATTCTTGGTGTGGGAGGGCATATGCAAGAGCTTAGGAGAGTGCGTTCGGGTATTTTGGGAGAGAGAGATAATATGGTGACTATGCATGATGTATTGGATGCCCAATGGGTTTATGATAATTATAGAGATGAGAGTTATTTGAGAAGGGTTATTATGCCTCTGGAAGTGCTGTTGACTAGCTATAAGAGATTGGTTGTGAAGGATTCTGCTGTTAATGCAATTTGTTATGGAGCAAAGCTAATGATTCCTGGGTTGCTGAGGTTTGAGAACGATATTGAGGTAGGGGAGGAAGTTGTGCTTATGACTACCAAAGGTGAAGCCATTGCTTTGGGAATTGCAGAAATGACTACTTCTGTAATGGCTACTTGTGATCATGGTGTGGTAGCAAAGATTAAAAGAGTGGTTATGGATCGCGATACCTATCCGAGGAAATGGGGTTTGGGACCCAAAGCATCCATGAAGAAGAAATTGATTTCAGAAGGGAAGCTAGATAAGCATGGGAAGCCAAATGAGAATACTCCTAAGGAGTGGCTGAGGAATGTGGTTTTACCTAGTGGTAAAGATTCTATCATTGCTGGTATGGCTGCTTCGCCTGAAGCAGATGCAGCCAAGGAGACTGCTGTAGTGGAAAAGGAGGATGGGCAAGGTCGTAAAAGAAAAGTAGCTGAAAGCAATGACATCCCTGCTCCTAAAAAGGCCAAAGTTGTACAAGTGGAGGAGGATGAAAAGGAAGAAACTATGAAGATCAAGAAGGTAAAAGAAGACGTTGTGGAGATTGAAGTTGATAAGAAGGAGAAGAAGAAAAAGAAAAAGAAGAAAGAGGCTGATGAAGGGGAACCCACTTCACCAGATACGGAGAAGTCTGAGAAGAAGAAAAAGAAGCACAGAGAAAAGACAGAAGCCGCCTCACCTGATACTGATAAGTCTGAGAAGAAGAAAAAGAAGAAGGACAAGGGAGCTGAAAATAATGCTGGTGAGTTACCCACGGAGACCAATAATGGAAAGGCTGACGGTGATGCTGATGAAAGTGAGAAGAAGAAGAAAAAGAAGCATAAGAAAAAAAGTGAAGATGCAGAGGAAGAATAG 1779 0.4643 MSEFEASRSEKKKKKHRNKDESETPDIADTDFMIKPQSFTPSVDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLPEYIKYGVMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPEVAKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDNHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGERDNMVTMHDVLDAQWVYDNYRDESYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPKASMKKKLISEGKLDKHGKPNENTPKEWLRNVVLPSGKDSIIAGMAASPEADAAKETAVVEKEDGQGRKRKVAESNDIPAPKKAKVVQVEEDEKEETMKIKKVKEDVVEIEVDKKEKKKKKKKKEADEGEPTSPDTEKSEKKKKKHREKTEAASPDTDKSEKKKKKKDKGAENNAGELPTETNNGKADGDADESEKKKKKKHKKKSEDAEEE 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0636 592 CDD PseudoU_synth_hDyskerin 84 266 - -
Bisa07g0636 592 CDD PUA_Cbf5 291 365 - -
Bisa07g0636 592 Pfam tRNA pseudouridylate synthase B C-terminal domain 223 289 IPR032819 -
Bisa07g0636 592 MobiDBLite consensus disorder prediction 429 592 - -
Bisa07g0636 592 Coils Coil 572 592 - -
Bisa07g0636 592 Pfam DKCLD (NUC011) domain 45 102 IPR012960 -
Bisa07g0636 592 MobiDBLite consensus disorder prediction 1 29 - -
Bisa07g0636 592 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 9 580 IPR004802 GO:0006396
Bisa07g0636 592 MobiDBLite consensus disorder prediction 435 554 - -
Bisa07g0636 592 Pfam PUA domain 293 365 IPR002478 GO:0003723
Bisa07g0636 592 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 52 377 IPR004802 GO:0006396
Bisa07g0636 592 NCBIfam uncharacterized domain 2 288 364 IPR004521 GO:0003723
Bisa07g0636 592 Gene3D PUA domain 45 376 IPR036974 GO:0003723
Bisa07g0636 592 Pfam TruB family pseudouridylate synthase (N terminal domain) 106 222 IPR002501 GO:0006396
Bisa07g0636 592 SMART DKCLD_2 44 102 IPR012960 -
Bisa07g0636 592 FunFam H/ACA ribonucleoprotein complex subunit CBF5 78 284 - -
Bisa07g0636 592 SUPERFAMILY Pseudouridine synthase 45 290 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bisa07g0636 592 Coils Coil 480 507 - -
Bisa07g0636 592 Gene3D Pseudouridine synthase 78 284 - -
Bisa07g0636 592 SMART pua_5 293 367 IPR002478 GO:0003723
Bisa07g0636 592 ProSiteProfiles PUA domain profile. 292 367 - -
Bisa07g0636 592 MobiDBLite consensus disorder prediction 1 28 - -
Bisa07g0636 592 SUPERFAMILY PUA domain-like 292 373 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0636 Bisa-ChrBisa07 16370910 16372688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0636 1 500 NAC Transcription Factor Family AT3G57150 78.968 0.0 735