Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0560 ATGTCGCACTTCGGAAGGTCTGGTCCTCCCGACATCACTGACCTAGTGCTCAACATCACATTCCGTACAACCGCCGATGACCTGTTTCCGCTGTTTGATAAATATGGCAAGGTCGTCGACATCTTCATCCCCAGAGATCGAAGGACTGGAGAATCGAAGGGTTTTGCATTTGTGCGTTATAAGTATGCTGAGGAGGCACAAAAGGCAGTTGATAGGCTGGACGGTAGAGTGGTTGATGGCCGGGAAATAACTGTTCAGTTTGCAAAATATGGCCCTAATGCAGAGAGGAATCACAAAGGAAGGATTATTGAAACATCCCCGAAGTCTAGGTACAGGTCAAGGAGTCACAGTCCCAGGAGAAGGCATCGTGATGATTACAAGGACAAGGATGACAAGGACAGGGATTACAAGAGACGTCGCAGCAGGAGCTATGATAGGTATGAAAGGGACAGGTATCGTGGAAGAGACAGAGATTATTGTTGCCAAAGCAGGAGCCGTAGTGCAAGCCCTGATTACTACAAGAGTCGGGGAAGGGGTTGCTATGATGATAAGCATTGTAGCCGAAGCCGAAGTCGATCAGTGGATAGTCCAAGTCCTCGAAGGAGTCCTTCCCCCCAAAGGAGTCTTTCCCCTCAAAGAAGCATTTCCCCACGGAAGAGTCCAAGGGGTGAAAGCCCTGAGAACCGTAGTTGTGATGGGCGATCTCCTTCACCTTGCAGTGTCTCGCCACGTGGTCAACTTAATCATTCACGAAGCCCACCCCCTCGAAATTCCAATGGAGATGTATGTACTATATATTTTAAGGAAAGAACTTAG 816 0.4853 MSHFGRSGPPDITDLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESKGFAFVRYKYAEEAQKAVDRLDGRVVDGREITVQFAKYGPNAERNHKGRIIETSPKSRYRSRSHSPRRRHRDDYKDKDDKDRDYKRRRSRSYDRYERDRYRGRDRDYCCQSRSRSASPDYYKSRGRGCYDDKHCSRSRSRSVDSPSPRRSPSPQRSLSPQRSISPRKSPRGESPENRSCDGRSPSPCSVSPRGQLNHSRSPPPRNSNGDVCTIYFKERT 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0560 271 SMART rrm1_1 13 86 IPR000504 GO:0003723
Bisa07g0560 271 MobiDBLite consensus disorder prediction 94 111 - -
Bisa07g0560 271 SMART rrm2_1 13 86 IPR003954 GO:0003676
Bisa07g0560 271 MobiDBLite consensus disorder prediction 121 162 - -
Bisa07g0560 271 MobiDBLite consensus disorder prediction 230 259 - -
Bisa07g0560 271 MobiDBLite consensus disorder prediction 196 219 - -
Bisa07g0560 271 CDD RRM_SRSF2_SRSF8 16 86 - -
Bisa07g0560 271 SUPERFAMILY RNA-binding domain, RBD 16 102 IPR035979 GO:0003676
Bisa07g0560 271 MobiDBLite consensus disorder prediction 176 195 - -
Bisa07g0560 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Bisa07g0560 271 Gene3D - 13 101 IPR012677 -
Bisa07g0560 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 84 IPR000504 GO:0003723
Bisa07g0560 271 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 15 223 - -
Bisa07g0560 271 MobiDBLite consensus disorder prediction 89 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0560 Bisa-ChrBisa07 13912838 13915580 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0560 16 88 Eukaryotic Initiation Factors Gene Family AT3G11400 35.616 1.24e-09 56.2