Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0522 ATGCGTGGAGCATTTTTCCAACAAGAGCAATTGTTCTGTAGTCTGGACTATGCTTGTATAATGCTCGTTTTCTTGCATCACTTTCAAGATATTTGGAACATTCTTCAGTTTAAAATGTCAGAAGTGGATGAGTACCGTTGCTTTATTGGCGGCCTTTCATGGTCAACATCTGATAGAAAATTAAAGGATACATTTGAAAAGTTTGGCAAGCTTCTTGAGGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTTACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATGGATTTAGATGGTCGAACTATTACTGTTGATAAAGCTCAGCCTCAACAAGGATCTGCTAGAGATGACGGTGACCGCTACCGTGAACGGGGTCGTGATCGTAACCGAGATTATGGAGGTGGTCGAGGGTCTAATGGTGGTGAATGCTTTAAATGTGGTAAACCTGGTCATTTTGCTAGAGAGTGTCCTGGTGAAGGAGGAAGAGGGAGCAGGTATGGTGGCCGGGAAGGTAGATATGGTGGTGGTGGTGGTGGGGGTGGTGGTCACTATGGCCCTGATAGAAATGCAGATCGTTATTCTAGTGGGCGCAGCAGGGACTCTGGTAGTCATGGAGATTCTAGAAGTGATCGGTATGGTCGTGATCGTGGTGGACCTTATGAGCGACGAGGATCAGGAGGCTTTCGTTCTGGATACTTCAAAACTGGAGGTGTTGCAGTCCTGTTACTGCCTGAACTTTCCTTTTCAATGACGATGTTCTGGGATTCTTGTTTGGATGGATCAATGATACCATTTGTTGCAATCTTATGCATGCTTGACATACTGTCAAATTTGATGTTGTGCACTATGCTATGGACAAATGCTGCTGGGTATCTTGTGAGTTGTGACTTTCATGCATGGGGAATTGCATACGAAATATTTGCTACCGGATTCCCAGTTTCAGTATTGGAAAGTTAG 999 0.4404 MRGAFFQQEQLFCSLDYACIMLVFLHHFQDIWNILQFKMSEVDEYRCFIGGLSWSTSDRKLKDTFEKFGKLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSARDDGDRYRERGRDRNRDYGGGRGSNGGECFKCGKPGHFARECPGEGGRGSRYGGREGRYGGGGGGGGGHYGPDRNADRYSSGRSRDSGSHGDSRSDRYGRDRGGPYERRGSGGFRSGYFKTGGVAVLLLPELSFSMTMFWDSCLDGSMIPFVAILCMLDILSNLMLCTMLWTNAAGYLVSCDFHAWGIAYEIFATGFPVSVLES 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0522 332 SMART rrm1_1 46 119 IPR000504 GO:0003723
Bisa07g0522 332 SUPERFAMILY Retrovirus zinc finger-like domains 148 183 IPR036875 GO:0003676|GO:0008270
Bisa07g0522 332 SMART c2hcfinal6 156 172 IPR001878 GO:0003676|GO:0008270
Bisa07g0522 332 MobiDBLite consensus disorder prediction 204 236 - -
Bisa07g0522 332 MobiDBLite consensus disorder prediction 115 154 - -
Bisa07g0522 332 MobiDBLite consensus disorder prediction 168 237 - -
Bisa07g0522 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 117 IPR000504 GO:0003723
Bisa07g0522 332 MobiDBLite consensus disorder prediction 126 147 - -
Bisa07g0522 332 Gene3D - 153 217 - -
Bisa07g0522 332 Pfam Zinc knuckle 156 171 IPR001878 GO:0003676|GO:0008270
Bisa07g0522 332 FunFam Glycine-rich RNA-binding protein RZ1A 39 152 - -
Bisa07g0522 332 Gene3D - 36 152 IPR012677 -
Bisa07g0522 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Bisa07g0522 332 ProSiteProfiles Zinc finger CCHC-type profile. 157 171 IPR001878 GO:0003676|GO:0008270
Bisa07g0522 332 CDD RRM2_NsCP33_like 46 121 - -
Bisa07g0522 332 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 39 241 - -
Bisa07g0522 332 SUPERFAMILY RNA-binding domain, RBD 23 155 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0522 Bisa-ChrBisa07 12989586 12992640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0522 47 153 Eukaryotic Initiation Factors Gene Family AT1G22760 32.710 3.81e-07 49.7