Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0484 ATGTCATTCCGAAATATAGTTCGTGATGTGAGAGATAGTTTAGGGAGCTTATCTAGACGGAGTTTTGATGTCCGGCTGACCAGCCATCACAGAGGAAAATCTCATGGTTCGATAAATGACCAGCCTCTAGTAATTCAAAATAGTTGCTGGGCTAGCTTGCCCCCAGAATTGCTCTATGATATCATCAGAAGACTTGAGAAAAGTGAGAGCACGTGGCCTGCTCGAAAGCATGTTGTTGCATGCGCTGCAGTTTGCCGGTCTTGGAGAACTATGTGCAAGGAAATTGTTAAGAATCCAGAGTTCAGCGGCAAGCTCACTTTCCCTGTGTCCCTAAAGCAGACGGGACCACGAGATGGAACCATCCAAGGTTTTATCAAAAGAGATAAATCTAAATTAACATACCGCCTATTCCTTTGTCTCAGCCCTGGTTTGTTAGTTGAAAATGGAAAGTTCCTCCTTTCTGCTAAGAGGATACGAAGAACAACTTACACAGAGTATGTTATTTCCATGGATGCCGATAACATCTCTAGATCAAGTAGCACTTATATTGGAAAGTTGAGATCAAACTTTCTTGGTACCAAATTTATAATATATGATACACAGTCTCCACACACTTCTGCTCATATACCCTCTCCCGGGAGGACAAGCCGAAGGTTTTATTCCAAAAAGGTCTCTCCGAAGGTCCCATCTGGGAGTTACAACATAGCTCAAGTAACATATGAATTAAATGTTCTCGGGACACGAGGCCCGAGGAGGATGCACTGCATTATGCATTCAATACCAGCCTCAGCAATTGATGCAGGTGGCACAGTCCCTGGCCAACCTGAGCTTCTTCCTCGCCCGCCGGAGGACTCGTTTCGGAGCATCTCCTTTTCAAAATCCTTAGATCACTCTATTGAGTTCAGCAGCACAAGATTTTCCGAGATTGGTGTTTCCTGCAACGAGGATGAGGATGGCAAAATGAGACCCCTGGTTTTGAAAAACAAACCTCCAAGATGGCACGAGCAATTGCAATGTTGGTGCCTCAATTTCCGGGGCCGGGTAACAGTTGCATCAGTTAAAAACTTTCAGTTGATTGCTGCAACCCAGCCGTCAGCCGGTGCTCCCACACCGTCTCAGCCAGCCCCCACAGAGCAAGATAAGATAATTCTGCAGTTTGGCAAAGTTGGGAAAGATTTGTTCACCATGGATTATCGGTATCCTCTTTCGGCATTCCAGGCTTTTGCAATATGCCTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA 1269 0.4531 MSFRNIVRDVRDSLGSLSRRSFDVRLTSHHRGKSHGSINDQPLVIQNSCWASLPPELLYDIIRRLEKSESTWPARKHVVACAAVCRSWRTMCKEIVKNPEFSGKLTFPVSLKQTGPRDGTIQGFIKRDKSKLTYRLFLCLSPGLLVENGKFLLSAKRIRRTTYTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQSPHTSAHIPSPGRTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCIMHSIPASAIDAGGTVPGQPELLPRPPEDSFRSISFSKSLDHSIEFSSTRFSEIGVSCNEDEDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPSAGAPTPSQPAPTEQDKIILQFGKVGKDLFTMDYRYPLSAFQAFAICLSSFDTKLACE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0484 422 CDD F-box_AtTLP-like 50 94 - -
Bisa07g0484 422 FunFam Tubby-like F-box protein 107 422 - -
Bisa07g0484 422 Pfam F-box domain 50 98 IPR001810 GO:0005515
Bisa07g0484 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
Bisa07g0484 422 Gene3D Tubby Protein; Chain A 109 416 IPR025659 -
Bisa07g0484 422 Pfam Tub family 111 417 IPR000007 -
Bisa07g0484 422 PANTHER TUBBY-RELATED 28 420 - -
Bisa07g0484 422 SUPERFAMILY F-box domain 46 93 IPR036047 GO:0005515
Bisa07g0484 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
Bisa07g0484 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
Bisa07g0484 422 PRINTS Tubby superfamily signature 166 182 IPR000007 -
Bisa07g0484 422 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Bisa07g0484 422 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Bisa07g0484 422 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Bisa07g0484 422 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Bisa07g0484 422 SUPERFAMILY Tubby C-terminal domain-like 99 422 IPR025659 -
Bisa07g0484 422 Gene3D - 45 98 - -
Bisa07g0484 422 FunFam Tubby-like F-box protein 45 98 - -
Bisa07g0484 422 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0484 Bisa-ChrBisa07 12216042 12218813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0484 1 422 TUB Transcription Factor Family AT1G76900 69.717 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bisa07g0484 Tub 1.8e-113 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g0484 07 12216042 12218813 Bisa07g0484 07 12216042 12218813 ECH