LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g0411	ATGGTGAGCCACATATCTTGTGTTACCCACATACGAGACTTAAAACCAGGTGACATGTGGACCTTACACTTTGGAAGATCTAAGTTGTTCATAAGACAATATTTGATGTCACAAAGCTACACAATGATTGAATCTTTATCATCTTATTTAGATAATCATCCAATATTTACAGAATTAGATTACACCTGTTGATTTGGGCACAGGGTTGCAGTTGAATTAGGAAATATGACTTCTGCTCATGACCTCACTGATAATGAATCTAATGATCAGCAGCAGTCAGACTCACAGAGTCAATCACCATCTACAAAGGGAATTTCTCCTGCAGATATTGCTACTCGGAGCATTCCACATGCAACACATCCACAGCCTGGAACTGGGCAAACTGTGGCACCGGCTGTTTACCCGTATCCAGATCCTTACTATAGAAGCATCTTTGCTCCCTATGAAGCACAAGCTTATCCTCCACAGCCCTATGGGGGACAGCCAATGGTCAATCTTCAGCTAATGGGAATTCAACAAGCTGGTGTTCCTCTGCAGACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCCAAACAATATCATGGTATATTGAGACGTAGGCAATCACGTGCCAAAGCTGAATCAGAAAATAAAGTTATTAGGAATAGAAAGCCATACTTGCATGAATCTCGACATTTGCATGCGCTTAAAAGAGCAAGAGGATGTGGAGGTCGGTTTCTGAATGCAAAGAAAAAAGAGAACCAACAGAATGAGGTGACATCAGCTGACAAATCACAGTCCAATAACAATCTCAGCTCTGATAAAAATGATCTTCCTTCATCAAATGGGACATCCTAA	840	0.4131	MVSHISCVTHIRDLKPGDMWTLHFGRSKLFIRQYLMSQSYTMIESLSSYLDNHPIFTELDYTCXFGHRVAVELGNMTSAHDLTDNESNDQQQSDSQSQSPSTKGISPADIATRSIPHATHPQPGTGQTVAPAVYPYPDPYYRSIFAPYEAQAYPPQPYGGQPMVNLQLMGIQQAGVPLQTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVIRNRKPYLHESRHLHALKRARGCGGRFLNAKKKENQQNEVTSADKSQSNNNLSSDKNDLPSSNGTS	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g0411	279	ProSitePatterns	NF-YA/HAP2 subunit signature.	188	208	IPR018362	GO:0003677\|GO:0016602
	Bisa07g0411	279	Gene3D	-	183	244	-	-
	Bisa07g0411	279	ProSiteProfiles	NF-YA/HAP2 family profile.	183	243	IPR001289	GO:0003700\|GO:0006355
	Bisa07g0411	279	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	81	276	IPR001289	GO:0003700\|GO:0006355
	Bisa07g0411	279	MobiDBLite	consensus disorder prediction	238	279	-	-
	Bisa07g0411	279	MobiDBLite	consensus disorder prediction	78	131	-	-
	Bisa07g0411	279	PRINTS	CCAAT-binding transcription factor subunit B signature	217	240	IPR001289	GO:0003700\|GO:0006355
	Bisa07g0411	279	PRINTS	CCAAT-binding transcription factor subunit B signature	186	208	IPR001289	GO:0003700\|GO:0006355
	Bisa07g0411	279	MobiDBLite	consensus disorder prediction	247	279	-	-
	Bisa07g0411	279	SMART	cbf3	182	243	IPR001289	GO:0003700\|GO:0006355
	Bisa07g0411	279	MobiDBLite	consensus disorder prediction	78	108	-	-
	Bisa07g0411	279	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	185	240	IPR001289	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g0411	Bisa-ChrBisa07	10857521	10863779	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g0411	77	279	CCAAT-HAP2 Transcription Factor Family	AT1G30500	57.073	3.56e-72	218

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Bisa07g0411		CBFB_NFYA	5.5e-26	No_clan