Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0399 ATGTCTCTGTTTGGGACTATTGATGTGTCTTGTCATGGGGAGGAAGAAGATGATCAATGTTGGCTTGATGAAGAAGATGATGTGGCACTTGTTTTGCCATTGACTTATCAAACACACCGAATAAGTCATTGGAATGCTGGATTACTGATAGAGATAGATAGAGAGGATCAACAGTACTACATACTTTTTCACCAAATGGAGGATTCTGAAGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACGCTGCTCCCGCCAACCCAGCCGCGCCATCCGGAACTCTGGTCCAGTCTGATTCTTCCGCTGTTGCTACCGCCTCAGCCAATGGTGCCGCAACCGGCGCCGCCGCCGACCATGTGGCAGGCAATATGCCCGGGCGCCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTTCGTGGACTCTGCATGAAGGGCGACGCCTGCGGCTTCTTACACCAGTATGACAAAGCAAGGATGCCGGTTTGCCGGTTTTTTAGATTGTACGGGGAGTGTCGCGAGCAGGATTGTGTGTATAAGCACACCAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCCAATGGCCCTGATTGCCGGTATAGGCATGCAAAGATGCCTGGACCTCCACCTCCTGTTGAAGAGGTGCTGCAAAAGATCCAGCATTTATATTCTTACAATTATGCCTCCTCAAACAAATTTTTCCAACAAAGAAGTGCTGGCTATTCTCAACAAGCTGATAAATCTCAGTTTCCACAAGGTCCTAATACAACAGACCAAGCTGTGCCAGGAAAGCCTTTAGCAGCAGAGTCGGGTAATGTCCAGCAGCAGCAGCAGCAACAACAAGTGCAACAAGCTCAGCAGCAGGCTAGCCAGAATCAAACTCAAAATATTCCTAATGGTCAGCCCAATCAAGTGAACAGAACTGCGATCCCTTTACCTCAAGGCATATCTAGGTATTTTATTGTTAAAAGTTGCAACCGTGAAAATCTGGAGTTATCTGTACAACAAGGCGTTTGGGCAACTCAAAGGAGCAATGAAGCTAAACTGAATGAAGCCTTTGACTCCGTAGAAAATGTGATATTGATTTTCTCAGTCAACAGAACTCGACATTTTCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGCCACTGGGGGAAACTGGAAATATGCCCATGGAACTGCACATTATGGCCGTAACTTTTCGGTTAAATGGTTAAAGTTGTGTGAATTGTCATTTCACAAGACACGTCATTTGAGGAATCCGTACAATGAGAACCTACCAGTAAAGATAAGTAGAGATTGTCAGGAGCTAGAGCCCTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAACTAATGGCAGTCTCACTTGCGGCAGAGTCTAAGCGAGAAGAGGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTTCCATTTGAGGACAACGAAGAAGAGGAGGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGCCCTGGTGTTGGGCCAGCTGCTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCTCCTCACATGCCTATGGCTCGTGGGGCCAGACCTATTCCAGGGATGCAGGGTTTTCCCCCAGTTATGATGAGTGATGGATTATCCTATGGACCTGTTACACCTGATGGATTTGGTATGCCAGATCTCTTTGGTATGGGTCCCCGTGGTTTTGGTCCATATGGTCCAAGGTTCTCAAACGATTTTGCAGGGCCCCCAGCAGCCATGATGTTTCGTGGGCGACCTTCACAACCTGGGATGTTTCCGGGTGGTGGGTTTGGGATGATGATGAATCCCGGACGTGCTCCCTTTATGGGAGGGATTGGGGCTGCAGGTGCAAATCCACGAGCAGGCAGGCCAGGTGGTATGCCTCCGATGTTCCCACCCCCACCACCACAACCTCAGAATGCTAACCGTGTAGCTAGGAGAGACCAAAGAACTAACGATCGGAATGACAGATATGGTTCAGGTTTAGAACAGGGGAAGGGTCAAGACATGCTGAGTCAAAGTGGTGGACCTGACGATGACATGCAATATCAACAAGGGTTCAATGCACACCAGGATGATCAGTATGCAGTTGGTAATAATCTTAGAAATGACGAAAGTGAAAGCGAGGATGAGGCGCCTCGGCGGTCCCGACACGGCGAGGGAAAAAAGAGAAAAGGCGAAGTTTAG 2259 0.4861 MSLFGTIDVSCHGEEEDDQCWLDEEDDVALVLPLTYQTHRISHWNAGLLIEIDREDQQYYILFHQMEDSEGVLSFDFEGGLDAAPANPAAPSGTLVQSDSSAVATASANGAATGAAADHVAGNMPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKMPGPPPPVEEVLQKIQHLYSYNYASSNKFFQQRSAGYSQQADKSQFPQGPNTTDQAVPGKPLAAESGNVQQQQQQQQVQQAQQQASQNQTQNIPNGQPNQVNRTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSATGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSLAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGPGVGPAAQGRGRGRGMMWPPHMPMARGARPIPGMQGFPPVMMSDGLSYGPVTPDGFGMPDLFGMGPRGFGPYGPRFSNDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRAPFMGGIGAAGANPRAGRPGGMPPMFPPPPPQPQNANRVARRDQRTNDRNDRYGSGLEQGKGQDMLSQSGGPDDDMQYQQGFNAHQDDQYAVGNNLRNDESESEDEAPRRSRHGEGKKRKGEV 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0399 752 Gene3D ph1033 like domains 303 460 - -
Bisa07g0399 752 MobiDBLite consensus disorder prediction 727 752 - -
Bisa07g0399 752 MobiDBLite consensus disorder prediction 496 515 - -
Bisa07g0399 752 CDD YTH 323 457 IPR007275 GO:0003723
Bisa07g0399 752 MobiDBLite consensus disorder prediction 471 534 - -
Bisa07g0399 752 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 124 185 - -
Bisa07g0399 752 Coils Coil 273 300 - -
Bisa07g0399 752 MobiDBLite consensus disorder prediction 471 485 - -
Bisa07g0399 752 MobiDBLite consensus disorder prediction 635 752 - -
Bisa07g0399 752 MobiDBLite consensus disorder prediction 670 684 - -
Bisa07g0399 752 MobiDBLite consensus disorder prediction 690 726 - -
Bisa07g0399 752 MobiDBLite consensus disorder prediction 649 664 - -
Bisa07g0399 752 MobiDBLite consensus disorder prediction 274 313 - -
Bisa07g0399 752 Gene3D - 123 187 - -
Bisa07g0399 752 MobiDBLite consensus disorder prediction 243 313 - -
Bisa07g0399 752 SUPERFAMILY CCCH zinc finger 131 154 IPR036855 GO:0046872
Bisa07g0399 752 ProSiteProfiles YTH domain profile. 322 457 IPR007275 GO:0003723
Bisa07g0399 752 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 93 744 IPR045168 -
Bisa07g0399 752 ProSiteProfiles Zinc finger C3H1-type profile. 129 156 IPR000571 GO:0046872
Bisa07g0399 752 MobiDBLite consensus disorder prediction 243 264 - -
Bisa07g0399 752 ProSiteProfiles Zinc finger C3H1-type profile. 183 210 IPR000571 GO:0046872
Bisa07g0399 752 SMART c3hfinal6 185 209 IPR000571 GO:0046872
Bisa07g0399 752 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Bisa07g0399 752 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Bisa07g0399 752 Pfam YT521-B-like domain 322 456 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0399 Bisa-ChrBisa07 10395481 10446516 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa07g0399 YTH 1.4e-45 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g0399 07 10395481 10446516 Bisa07g0399 07 10395481 10446516 ECH