Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0357 ATGTCTATAATCGAGACCCCCACCGTCGATTGCGTACATCAGCGCGGCGGAGGCGGCACCGATCATCACCGTGTCTCATCGAAGCGAAAGTTGGATGAGTACGGGGCTGCCTTCGACGATGACGAGGAGAACTACGCTGATTTATGTGACTTGATATCGGTAAGAATGAGGAAAGACGAACCTAAGGCCGTAAATTCCTGTAATTCTGATGCCGTTAATGGGTCCGTGTCAGAAGTTGTTGATACTAGGATTTCGGACGCAGTCTCGCATGCTTGTTCGTCTCGGTCCGAGTCAACTCGGTCCTGGTCCAAATTGCAATTTTTCGTTCGGATGATGTCGGAAGGCAAGACTATGGTAGTGCAGGCTTGTCCACAAGATACGGTGAGATCGATTCACGAACATATCCAAACAATTACTGGCATTCCTCTGTTTGAGCAGAGACTGATATACAGGGGTAAGCAGCTTCAGTGGGAACAGACTCTGGTGGAGTGTTCCATTCAGAATGATGCTATTCTTCAACTAGTTGGGCGTATGCGTAGCACAGAACACCCTCAAGCGTGGCAGGTAATCAACGATATGGTATCCCTAATTTGCCGTCTCTACAGAGGTGAAATGGAACATGATGCTTTGAAAACTATCAAAGGCCTAATGACTGATTACTTAAACATGACTCCTAGAATTGACAATGAATCTGCTTCTGGGTATTTCCAGATTTTTATGTCTTCGTGTGCTCCTGCTGTGCTAGTTATGCTCTATATGTCGCCTTATGGGGGTAACAAAGAATGTGCTGATTGTTCCATTAGGCATTTTATGAGTTCCTGTCGCACTACCTTGTCTAAGTCATTGCACACTAAGTGTGCACGTATAGTGTTGGAATTCTGCAAATTGCTTAGAAGGGTGGGTTCTGAGGATCCTTTGTATCTCTCTTGTCGGAGTACCTTTGGGTCTTTATTGGAGACCGCTAGTGTTTCCTATGTTTCTGAGAGTGAGAAAGAATTGATTTTAATTCAAGATATATTCCCTTTTGTTCAGGAGCTTGCAAATAGATTGTTGAGGGCTTTGGATATGGGTATGGAATTACCCCATAGCGTAGGGCCATTGCTGAGTGATGTTCGGGATTTTACTGCATTTTTACTCCCTTTAAGGACTAGAATCAGCAACCAACAAGATTTTACTTCTTCCAAGATGAATGGAAAACGAAATAAGCATCTCTTACATGTGGAAGAGAATGAATACCTTCATGTTATATTTGTTGAATTATTAAAGAAAATGGATCAGTGCCTTAATAAAATGGGGGAAAGCTTGCCTGTCAAGGAAAGAGTGGAGGGGGATAATCTTTATTCCGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTGTATCACCTTTCTAAGCTCTATGAGGGAGCTGAAGAAGAATTTTGGTCGGTTTTGAGACGTCAAAGACGTATGCTGATTCTACTTATCATTCAGTATGCAAAGAGAACTGATGATCATCAATGGATTCTCGAGCACAAGTGTGTAACGAATTTTGAATCTAGAAGGCATTTGGTGATGATGATGTTTCCAGAGGTAAAAGAAGATTATGAGGAATTGCATGAGATGCTTATTGACAGGTCTCATTTGTTAGCAGAATCATTTGAATACATAGCACGAGCAGAGCCTGAATCTCTTCATGCTGGTTTGTTTATGGAATTCAAAAATGAGGAAGCTACGGGTCCTGGTGTACTGCGGGAGTGGTTTTTCTTGGTTTGTCAAGAAATATTTAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGACCGGAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCATCTTGATTATTTCACCTTCTCTGGTCGAGTTATTGCATTAGCTTTGATGCATCGGGTGCAAGTGGGTATTGTTTTTGATCGTGTCTTTTTCTTGCAACTGGCTGGAAACTATATTACTTTAGAAGATATACGGGATGCTGATCCTTCTTTGTATAGTAGCTACAAGCAAATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCTTTAGGATTGACCTTTGTTAGAGATGTGGAGGAATTAGGTGACAGGAAAGTGATTGAGCTTTGCCCTGGTGGGAAAAGCCTTGTTGTGAATAGTAAGAACAGGGAAGAGTATGTTGATCTTCTTATACAGGATCGCTTTGTGAAATCTGTGTCTGAGCAGGTTTCACATTTTGCCCAAGGTTTTGCTGATATCCTTTGCAACCCAAGGCTCCAGCAGTTCTTTTTCAGAAGTTTAGATCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAAGAATCATTTCTGTCGAAGATTGGAAGGCACATACTGGGTATAACGGCTATACAGAGACAGATCCTCAGATATCTTGGTTCTGGGAGATTGTTGGGAGAATGTCAGCGGAACAAAGGAAGGTTCTTCTGTTTTTCTGGACATCTCTGAAGTATTTACCTGTAGATGGTTTCCAAGGCTTGGCTTCTCGTTTGTACATTTACAAGTCCTTGGAACCTGATGATCGACTTCCTTCGTCGCACACATGCTTTTTCCAGCTGTGCTTCCCTCCATATCCGTCTATGTCTGTCATGCAAGACCGCCTTCGAATAATCACACAAGAACACATTGGCTGCAGCTTTGGTACATCGTGA 2685 0.4242 MSIIETPTVDCVHQRGGGGTDHHRVSSKRKLDEYGAAFDDDEENYADLCDLISVRMRKDEPKAVNSCNSDAVNGSVSEVVDTRISDAVSHACSSRSESTRSWSKLQFFVRMMSEGKTMVVQACPQDTVRSIHEHIQTITGIPLFEQRLIYRGKQLQWEQTLVECSIQNDAILQLVGRMRSTEHPQAWQVINDMVSLICRLYRGEMEHDALKTIKGLMTDYLNMTPRIDNESASGYFQIFMSSCAPAVLVMLYMSPYGGNKECADCSIRHFMSSCRTTLSKSLHTKCARIVLEFCKLLRRVGSEDPLYLSCRSTFGSLLETASVSYVSESEKELILIQDIFPFVQELANRLLRALDMGMELPHSVGPLLSDVRDFTAFLLPLRTRISNQQDFTSSKMNGKRNKHLLHVEENEYLHVIFVELLKKMDQCLNKMGESLPVKERVEGDNLYSAWSQYLSILKELYHLSKLYEGAEEEFWSVLRRQRRMLILLIIQYAKRTDDHQWILEHKCVTNFESRRHLVMMMFPEVKEDYEELHEMLIDRSHLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFFLVCQEIFNPQNALFVACPNDRRRFFPNPASKVHPLHLDYFTFSGRVIALALMHRVQVGIVFDRVFFLQLAGNYITLEDIRDADPSLYSSYKQILEMDADFIDSDALGLTFVRDVEELGDRKVIELCPGGKSLVVNSKNREEYVDLLIQDRFVKSVSEQVSHFAQGFADILCNPRLQQFFFRSLDLEDLDWMLHGSERIISVEDWKAHTGYNGYTETDPQISWFWEIVGRMSAEQRKVLLFFWTSLKYLPVDGFQGLASRLYIYKSLEPDDRLPSSHTCFFQLCFPPYPSMSVMQDRLRIITQEHIGCSFGTS 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0357 894 Gene3D - 98 194 - -
Bisa07g0357 894 Gene3D Hect, E3 ligase catalytic domain 654 736 - -
Bisa07g0357 894 SMART hect_3 552 892 IPR000569 GO:0004842
Bisa07g0357 894 SUPERFAMILY Ubiquitin-like 106 193 IPR029071 -
Bisa07g0357 894 ProSiteProfiles Ubiquitin domain profile. 105 181 IPR000626 GO:0005515
Bisa07g0357 894 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 98 193 - -
Bisa07g0357 894 FunFam E3 ubiquitin-protein ligase UPL5 778 893 - -
Bisa07g0357 894 PRINTS Ubiquitin signature 137 157 IPR019956 -
Bisa07g0357 894 PRINTS Ubiquitin signature 116 136 IPR019956 -
Bisa07g0357 894 PRINTS Ubiquitin signature 158 179 IPR019956 -
Bisa07g0357 894 SMART ubq_7 105 177 IPR000626 GO:0005515
Bisa07g0357 894 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 106 892 - -
Bisa07g0357 894 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 654 736 - -
Bisa07g0357 894 Gene3D Hect, E3 ligase catalytic domain 780 892 - -
Bisa07g0357 894 Pfam Ubiquitin family 108 179 IPR000626 GO:0005515
Bisa07g0357 894 Pfam HECT-domain (ubiquitin-transferase) 583 886 IPR000569 GO:0004842
Bisa07g0357 894 SUPERFAMILY Hect, E3 ligase catalytic domain 529 881 IPR035983 GO:0004842
Bisa07g0357 894 Gene3D Hect, E3 ligase catalytic domains 536 761 - -
Bisa07g0357 894 CDD HECTc 533 892 IPR000569 GO:0004842
Bisa07g0357 894 ProSiteProfiles HECT domain profile. 554 894 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0357 Bisa-ChrBisa07 9487196 9497285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0357 105 179 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 1.18e-10 58.5