Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0351 ATGGAAATGGACCCTTGCAAGCTTTTCATTGGTGGGATTTCCTGGGGCACAAATGAAGACCGACTCAGACAGTATTTCCAGAAATTTGGAGATGTAGTGGAAGCTGTAATAATGAAGGATCGGACTACTGGGCGTGCCCGTGGATTCGGATTTATTGTTTTTTCTGATCCTTATGTTGCTGAGCAAGTTGTTATGGAAAGGCATGTCATAGATGGGAGAACTGTTGAAGCAAAAAAGGCTGTCCCAAGATATTATCAGAACATTTTAAACAGTAGTAACAGCAGTGTTCATGGTTCTCCTCGTCCTCGCCGCACAAAGATATTTGTAGGAGGTCTAGCATCCACACTTACTGAGAGTGATTTTAAGAAGTACTTTGATCAATTTGGAACTATTACCGATGTTGTTGTGATGTATGATCATAACACTCAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTCTGAGGAAGCAGTTGAGAAAGTTCTGTATAAAAGTTTTCATGAACTTAATGGTAAAACGGTCGAGGTTAAGCTTGCTGTTCCAAAGGAATTATCTTCGGGACCAAATAGAGGCCAATTAGCTGGATATAATTATGGCCTAAGTAGAGTTAGCAGCTTTTCCAGTGGTTGCATCCAGGGATATAATCCAAGCGTGGTTGGAGGTCATGGACGTAGAACAGATGGCATATTTAGTCCTGTTAATATTGGTAGGAGTGGATATCCTCCGTTAAGTCCTAGTTATGGGACAGGACACACTTCTGATCTAGAATTGAGTCAAAATGGAAATACAAACTTTGCTTCTACCCTCATTTTAGGACGGGAATTAAACCCTTCGTATGATGGAAGTCCAAGCAGGTATAATAATACCTCAGCTTATGCTGGCAAAAGTAGATTGAGCAGTTCAACTTTAAGTTTAGCAAATAAAAATTGGGGCAATGGGAGTTTTAACTATGCTACTAACCTTACAAGCTCTGATGCTTTTGACGGGTATGGAGCTGAAAATTTGAGCATGGGTTCTTTTGGTAGTATTGAAGCACTTTGGAGTTCCTCCCCTAGTACCAATCAAGCTGGAACTATTGGCTCCGGATATGGTAAGGATGGTGTTAACTTTGGCTCTGAAAATGTAATTTTTGGCTCAAGAGCAGTTGGTTATGGAAAAAGTAGTGAAACCATTGTGACATCAGGGTCATCATATGCTTCAAATGGCAGTTATGATAGATCATATAAAGATATTTTTGAAGCTGGGTCATTTTATGGAGACCACATTTGGAGATCATCATCTTTAGAACTAGAGGATTCTGGCTCTTTTGGTTATGGCCTGGGAGATGGTGATTTGGATTTAATGAGCAAAAGTTCTGGTCGCTACATTGAGGCTTGTGGACAATCAAATAGAGGTAAGAGGTGTTTCTCTTCATCATATAAGAATAAGAAATTCCTTACTGATATTTACAGGTTCTGTTCTTACATTGGCTTATCTAGAATTATTCATGTTATGTCAACTATGAGTTTGGCTCAAATCAGTAGTATCAAGAAATATAATTACCATATTCTTAGAATTGTATTCATCTCACAGATTTCTGTTGTGCAATAG 1593 0.3905 MEMDPCKLFIGGISWGTNEDRLRQYFQKFGDVVEAVIMKDRTTGRARGFGFIVFSDPYVAEQVVMERHVIDGRTVEAKKAVPRYYQNILNSSNSSVHGSPRPRRTKIFVGGLASTLTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLYKSFHELNGKTVEVKLAVPKELSSGPNRGQLAGYNYGLSRVSSFSSGCIQGYNPSVVGGHGRRTDGIFSPVNIGRSGYPPLSPSYGTGHTSDLELSQNGNTNFASTLILGRELNPSYDGSPSRYNNTSAYAGKSRLSSSTLSLANKNWGNGSFNYATNLTSSDAFDGYGAENLSMGSFGSIEALWSSSPSTNQAGTIGSGYGKDGVNFGSENVIFGSRAVGYGKSSETIVTSGSSYASNGSYDRSYKDIFEAGSFYGDHIWRSSSLELEDSGSFGYGLGDGDLDLMSKSSGRYIEACGQSNRGKRCFSSSYKNKKFLTDIYRFCSYIGLSRIIHVMSTMSLAQISSIKKYNYHILRIVFISQISVVQ 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0351 530 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bisa07g0351 530 SUPERFAMILY RNA-binding domain, RBD 3 100 IPR035979 GO:0003676
Bisa07g0351 530 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Bisa07g0351 530 Gene3D - 4 86 IPR012677 -
Bisa07g0351 530 FunFam Heterogeneous nuclear ribonucleoprotein 1 102 189 - -
Bisa07g0351 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bisa07g0351 530 Gene3D - 103 192 IPR012677 -
Bisa07g0351 530 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 459 - -
Bisa07g0351 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Bisa07g0351 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
Bisa07g0351 530 CDD RRM2_Hrp1p 106 183 - -
Bisa07g0351 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 182 IPR000504 GO:0003723
Bisa07g0351 530 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bisa07g0351 530 SMART rrm1_1 106 178 IPR000504 GO:0003723
Bisa07g0351 530 SUPERFAMILY RNA-binding domain, RBD 95 201 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0351 Bisa-ChrBisa07 9166153 9168997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0351 8 217 Eukaryotic Initiation Factors Gene Family AT2G36660 27.354 1.86e-13 71.2