LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g0296	ATGGACTCAAAACCTAGTGCTAGAGCTCCTTCAAAACTGCATAAAAATACAGCTGCTATACAGACAGTAGAGGCAAAAGACGTCAGGCCTTCCTCACCTGTGATTTCAAAAATAGGCAAACATGAACTCGCTGCTCCAGACAGTTCAGCAAAATCTGTGCAGAACTCTTCAAAACAGAATATTCAAGAAACTTCTGAAAACAAGAAGTTGGGACATTCAAACCAAAAGGGGCCTGCTGATTCCTTGATTAATAAATGTAGTTCTGGTGCTTCCTCATCTGTTCTTGAGCAAGCATCTGGAGAAGTTGACCATCCTATTAATGAAAATAGAGGTTCGCAGGATAGCTCTATTGATCAAGAAAAGAAGACATCAGAGTATGGAAGTGTGAAGAATAGTTCTGTTTCAGCTAAAGTTAGTGATGGGGCAAGCAGTTTTGGAAAAACCAGTGTAAGTGCCAAGATTAGTGATCGAGCTGATTATGTTGAGAGTGGTAAGAGCAGTATCTGCAGAGGAAGCACAAGCAGTGATATCAGTGATGAGAGCACCTGTAGCAGCTTTAGTAGCAGCCTAAGCAAACCTCATAAAGGAAATGACTTGAGATGGGAAGCCATCCAAGCTGTCCGAGCTAAAGATGGGATGCTGGGTTTAGGTCACTTTAGACTACTGAAGAGGTTGGGTTGTGGGGATATTGGGAGTGTTTACCTCTCTGAGTTAAGTGGAACCAAATGCTATTTTGCAATGAAGGTAATGGACAAAGCATCCCTAGCAAGCCGTAAGAAGCTGCTTCGTGCTCAGACTGAAAGGGAAATACTGCAGTCACTGGATCATCCCTTTCTCCCAACATTGTATAGCCATTTTGAGACTGAGAAGTTCTCATGCTTGGTAATGGAATTCTGCCCTGGTGGAGACTTGCACACACTTAGGCAGAAACAGCCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTATGTAGCAGAAGTCTTGCTGGCTTTGGAATACCTTCACATGCTTGGAATTGTCTACCGTGACCTCAAGCCAGAAAATGTCCTTGTGAGGGATGATGGGCATATTATGCTTTCTGACTTTGATCTTTCTCTCCGTTGTGCTGTTAGTCCAACTCTTGTCAAAACCTCATCAGTGGAATCTGAGCCTCTAAGAAAGAATCCTGTCTATTGCATCCAGCCAGCTTGCATTGAGCCACCTTCCTGCATCCAGCCATCTTGTGTTGCTCCTACAACATGCTTTTCACCGAGGCTCTTCTCTAGCAAATCAAAGAAGGATCGGAAACCCAAGACTGAAATTGGAAACCAAGTGAGTCCATTACCTGAGCTCATTGCGGAGCCTACTGATGCTCGATCTAAGTCATTTGTTGGAACCCATGAGTACTTGGCACCTGAGATTATCAAGGGTGAAGGTCATGGGAGTGCGGTTGATTGGTGGACTTTTGGAATCTTTCTGTACGAGCTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAACCGAGCTACATTGTTTAATGTTGTAGGTCAGCCTCTCCGTTTTCCAGAATCCCCTGTTGTGAGTTTTGCAGCTAGGGATCTTATAAGGGGTTTGCTTGTAAAGGAACCACAGCACAGATTGGCATATAAACGAGGGGCTACTGAAATCAAGCAACACCCATTCTTTGAAGGCGTGAATTGGGCATTGATCCGTTGTGCTACCCCACCCGAGATCCCAAAGCCTGTAGAGTATGAGAGGATACCTTCCCCTGCCTCTTCAGGCGGTGAAAAGGTCGTTAACCGAATGTCAATTCCTGATCAGAAAGGCTCTGACAATTATCTCGAATTTGATTTCTTCTAG	1845	0.4428	MDSKPSARAPSKLHKNTAAIQTVEAKDVRPSSPVISKIGKHELAAPDSSAKSVQNSSKQNIQETSENKKLGHSNQKGPADSLINKCSSGASSSVLEQASGEVDHPINENRGSQDSSIDQEKKTSEYGSVKNSSVSAKVSDGASSFGKTSVSAKISDRADYVESGKSSICRGSTSSDISDESTCSSFSSSLSKPHKGNDLRWEAIQAVRAKDGMLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKASLASRKKLLRAQTEREILQSLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSVESEPLRKNPVYCIQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKTEIGNQVSPLPELIAEPTDARSKSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEYERIPSPASSGGEKVVNRMSIPDQKGSDNYLEFDFF	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g0296	614	MobiDBLite	consensus disorder prediction	48	98	-	-
	Bisa07g0296	614	Gene3D	Transferase(Phosphotransferase) domain 1	450	575	-	-
	Bisa07g0296	614	PANTHER	FLIPPASE KINASE 1-RELATED	51	580	-	-
	Bisa07g0296	614	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	340	352	IPR008271	GO:0004672\|GO:0006468
	Bisa07g0296	614	FunFam	Serine/threonine-protein kinase AGC1-7	450	575	-	-
	Bisa07g0296	614	Gene3D	Transferase(Phosphotransferase) domain 1	303	378	-	-
	Bisa07g0296	614	Pfam	Protein kinase domain	454	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g0296	614	Pfam	Protein kinase domain	220	372	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g0296	614	FunFam	Serine/threonine-protein kinase D6PK-like	217	302	-	-
	Bisa07g0296	614	MobiDBLite	consensus disorder prediction	1	147	-	-
	Bisa07g0296	614	ProSiteProfiles	Protein kinase domain profile.	219	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g0296	614	SMART	serkin_6	219	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g0296	614	CDD	STKc_phototropin_like	218	576	-	-
	Bisa07g0296	614	MobiDBLite	consensus disorder prediction	126	147	-	-
	Bisa07g0296	614	SUPERFAMILY	Protein kinase-like (PK-like)	196	583	IPR011009	-
	Bisa07g0296	614	FunFam	serine/threonine-protein kinase D6PK-like	303	370	-	-
	Bisa07g0296	614	Gene3D	Phosphorylase Kinase; domain 1	217	302	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g0296	Bisa-ChrBisa07	7791878	7795385	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g0296	39	614	AGC Kinase Gene Family	AT5G47750	75.779	0.0	867

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Bisa07g0296		Pkinase	6.2e-37	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa07g0296	07	7791878	7795385	Bisa07g0296	07	7791878	7795385	ECH