Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0224 ATGGGTGCTCCTAAGCAGAAATGGACACCAGAAGAAGAAGCAGCACTCAAAGCTGGAGTTGTTAAGCATGGGGTAGGGAAATGGCGAACAATACTTAAGGATCCAGAGTTCAGTAGTGTCTTATATCTGCGATCTAATGTAGATCTCAAGGATAAATGGAGAAATCTGAGTGTGATGGCAAACGGATGGAGCTCCAGGGACAAGTCTAGATTAGCTGTCAGAAGGGTGCAACAAGTCCAAAAACAGGATGAAAACACTTTGATTGCCACTTCTGTTGTTCCAAGCGACGAAGAAATTGTGGATGTCAAGGCTTCTCAAGTTCCTAGAGATATGCTTCAGATCCCTGGTCCAAAGAGGTCTATTGTAAGATTGGATAACCTTATAATGGAAGCAATAACCAGCTTGAAGGAGCCTGGAGGTTCCAACAAGACAAATATTGCAGCTTACATTGAGGACCAATATTGGGCGCCTCCAGACTTTAGGAGACTCTTGTCAGGAAAACTGAAATCGTTAACAGCAAGTGGAAAACTGATCAAGGTAAAACGCAAATATAGGATTGCACCTACCCCAGCATATTCTGACAGAAGAAGAAACTCATCCATGTTATTGTCGGATGCAAGGCAGAGATTCTCTATGAAGGTTGATAAGGATGAGGCCAATGCCGTCATTACAAAGTCTCAGATAGATTTAGAACTAGCAAAAATAAGGTCTATGACAGCACAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCTGCCATAGCAGAAGCAGAAGAAGCAGCAAGGGAGGCAGAGGCCGCAGAAGCTGATGCCGAGGCAGCACAAGCTTTTGCAGACGCTGCAATGAAGACACTTAATGGGAGAAACACCCCAAAATTGAGGCAGTCCGTAGAGCTGATGCGAGCCTGA 921 0.4517 MGAPKQKWTPEEEAALKAGVVKHGVGKWRTILKDPEFSSVLYLRSNVDLKDKWRNLSVMANGWSSRDKSRLAVRRVQQVQKQDENTLIATSVVPSDEEIVDVKASQVPRDMLQIPGPKRSIVRLDNLIMEAITSLKEPGGSNKTNIAAYIEDQYWAPPDFRRLLSGKLKSLTASGKLIKVKRKYRIAPTPAYSDRRRNSSMLLSDARQRFSMKVDKDEANAVITKSQIDLELAKIRSMTAQEAAAVAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFADAAMKTLNGRNTPKLRQSVELMRA 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0224 306 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bisa07g0224 306 SMART sant 4 59 IPR001005 -
Bisa07g0224 306 Gene3D - 2 59 - -
Bisa07g0224 306 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa07g0224 306 FunFam Telomere repeat-binding factor 1 118 198 - -
Bisa07g0224 306 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa07g0224 306 PANTHER SINGLE MYB HISTONE 4 1 293 IPR044597 GO:0003691
Bisa07g0224 306 SUPERFAMILY "Winged helix" DNA-binding domain 117 197 IPR036390 -
Bisa07g0224 306 FunFam Telomere repeat-binding factor 1 2 58 - -
Bisa07g0224 306 Coils Coil 244 281 - -
Bisa07g0224 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Bisa07g0224 306 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa07g0224 306 Gene3D - 118 197 IPR036388 -
Bisa07g0224 306 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Bisa07g0224 306 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bisa07g0224 306 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0224 Bisa-ChrBisa07 5845345 5852260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0224 1 297 Single Myb Histone (SMH) Gene Family AT1G49950 65.902 1.23e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bisa07g0224 Linker_histone 9.1e-09 CL0123