Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0209 ATGAGGAGGTCTAGGATATGTGTGAAGAACCTGCCGAAATATGTTGCAGAAGATCGACTACAGGAAGTCTTTTCACAGAAAGGAGAAATAACAGACGTAAAGCTTATGCGCACCAAAGATGGTAAGAGTCGGCAATTTGGTTTTATTGGGTTCCGTACAGAGGATGAAGCCGAGGAAGCTATAAAATATTTCAATAGATCCTACCTTGACACCTGTAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGTGATCCAAATATTCCTCGTCCATGGAGTCGATATTCAATAAAGAAAGAGGAAAAAGTGACCCAAGATGGGAAGAAACATGCTGAAAATAGAAGTGTTGCTAAGGCTAAAGGCGATGCAGAGAATTTGAAGAAGGGCACTGATATTGATAGCCAACAGCTTCAAGAATTTCTTCAGGTCATGCAGCCTCGGGCTAAGTCAAAACTGTGGGCAAATGATACATTATCAGTGCAGGATAATGTTAGTGAGAAGCAAGAAGTAGCAGAGAAAGGAAGCAAGGATACACCAGTTCCAGTGCGAGCTGAGTTACTTCAAAGTGGCTTTGTAGATGATGGGTCCTCATATAATCATGAATCCAAGAAATCAAACAATCTTGTCCATGATGATGTCATTTCAGATATGGACTATTTCAAGAGTCGGGTGACCAAGAAGTGGTCTGATTCTGAAAGCAGTGAAGATGAAGATGACAACAATACTTCTGTGAGCAGTGATGATGATGACGACAAAGACAGTGATAGTCATGGCTATGAAGGTGAACAAAATTGTGATAATAAATCTTCAAAAGGAACTGGAAGAATTGTTGCTCAAAACTCAGATCCATCAGGTCAAGATGATATCTCTGGTGAGGATGATGACCATAAAAAGGCTGAAGTGAAAGGCCCTTCCAATTATTCTGGTGATGAAGGATCTGAGCAAAAAGCCCCATCATCACGTTTGGAAGATGAGAAAGGAGTTTTTGAGTCTTGTCGACTGTTTGTCCGTAATCTGCCATATACAGCCACGGAGGAGGAACTGGAAGAACACTTCAGCAAGTTTGGTAGTGTCTCACAGGTTCATCTAGTTGTTGACAAACATACAAAACGCTCCAAAGGATTAGCATATATTCATTACACAGTTCCAGAATCTGCAGCCAGGGCACTAGAAGGGTTAGACAATTCAATCTTTCAAGGCAGATTGTTGCATGTTTTGCCAGCCATGAAAAGACCTTCAGACAACAAGGAGAACAATTCTTCCATGGACCTGAGCTCAAAAACTTTGAAGCAACGGAGAGAGGAAGAGAGAAAAGTGGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAGTTGTTGAAAACATTGCTCGTAAATATGGTGTGAGTAAAAGTGATTTACTTGATCGAGAAGCTGATGATCTTGCTGTACGCATTGCATTGGGAGAGACTCAGGTTATTGCAGAGACAAAAAAGGCCCTTACAAATGCTGGAGTGAATATGGAGTCTTTGGAGGAGTTTGCCAGTGGTAAAAATGTTGGGGTGAAAAGAAGCAACCATGTACTGTTAGTGAAGAACTTGCCATATGGTTCTTCAGAAAATGAATTAGCAAAGCTGTTTGGGAAATTTGGTAGTTTGGACAAAATAATTCTCCCTCCAACAAAGACATTGGCCTTGGTTGTGTACCTTGAACCATCTGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTTCAAAGATGCTCCATTATACTTGGAATGGGCTCCTTCCAATGTTCTGATGCCAACTTCAACATCTAAGAATAATGAAAAGAGTGGTGCAATTGGTGAAAATGATGCCAAACGGCAGATATTGGAGCAGCATCTGGAAGGAATATCAGATGTGGACATGGATCCTGACAGAGTAGAGGCACGGTCTCTGTTTGTCAAGAACCTCAATTTTAAGACATCAGACGAGGGTTTGAAGAAACATGTTACTGAACACATGAAAGAGGGAAGAATTTTGAGTGTCAAGGTCAAGAAGCATTTGAAAAACGGAAAACAGGTTTCCATGGGATTTGGATTCATTGAGTTTGACTCTATGGAGACTGCTACAAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGATGGCCATGCACTTATTTTACAACTTTGCCATGCCAAGAATGATGGCCAAGTACTTAAAGCAGTTGGGAAGGACAAAAGTTCAACAAAATTACTTGTAAGAAATGTAGCTTTTGAGGCGACAGAGAAGGAATTGAGACAGTTATTTAGCCCATTTGGCCAGATTAAGAGCTTAAGGTTGCCAATGAAGTTTGGAAGTCATAGAGGCTTTGCTTTTTTAGAATATGTTTCGCAGCAGGAGGCACAGAATGCGCTTAAAGCACTCTCAAGCACCCACTTGTATGGCAGGCATCTGGTGATAGAGAGAGCGAAGGAAGGCGAGAGTTTAGAAGAACTACGGGCTCGAACAGCTGCTCAATTTAGTGACAATCAAAATGGATGTCAAAATCCTGCCAGGTTATCCAAGAAAAGGAAGCACTTGGCCATCTTGGATGAAGGAAAGATGAAGTTTGAAAGAATTGCTGATTAG 2619 0.415 MRRSRICVKNLPKYVAEDRLQEVFSQKGEITDVKLMRTKDGKSRQFGFIGFRTEDEAEEAIKYFNRSYLDTCRITCEVARKVGDPNIPRPWSRYSIKKEEKVTQDGKKHAENRSVAKAKGDAENLKKGTDIDSQQLQEFLQVMQPRAKSKLWANDTLSVQDNVSEKQEVAEKGSKDTPVPVRAELLQSGFVDDGSSYNHESKKSNNLVHDDVISDMDYFKSRVTKKWSDSESSEDEDDNNTSVSSDDDDDKDSDSHGYEGEQNCDNKSSKGTGRIVAQNSDPSGQDDISGEDDDHKKAEVKGPSNYSGDEGSEQKAPSSRLEDEKGVFESCRLFVRNLPYTATEEELEEHFSKFGSVSQVHLVVDKHTKRSKGLAYIHYTVPESAARALEGLDNSIFQGRLLHVLPAMKRPSDNKENNSSMDLSSKTLKQRREEERKVAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVIAETKKALTNAGVNMESLEEFASGKNVGVKRSNHVLLVKNLPYGSSENELAKLFGKFGSLDKIILPPTKTLALVVYLEPSEARAAFRGLAYKRFKDAPLYLEWAPSNVLMPTSTSKNNEKSGAIGENDAKRQILEQHLEGISDVDMDPDRVEARSLFVKNLNFKTSDEGLKKHVTEHMKEGRILSVKVKKHLKNGKQVSMGFGFIEFDSMETATNVCRDLQGTVLDGHALILQLCHAKNDGQVLKAVGKDKSSTKLLVRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGSHRGFAFLEYVSQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDNQNGCQNPARLSKKRKHLAILDEGKMKFERIAD 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0209 872 SUPERFAMILY RNA-binding domain, RBD 633 733 IPR035979 GO:0003676
Bisa07g0209 872 MobiDBLite consensus disorder prediction 224 323 - -
Bisa07g0209 872 MobiDBLite consensus disorder prediction 99 129 - -
Bisa07g0209 872 MobiDBLite consensus disorder prediction 99 128 - -
Bisa07g0209 872 FunFam Nucleotide/nucleic acid binding protein 642 737 - -
Bisa07g0209 872 MobiDBLite consensus disorder prediction 249 263 - -
Bisa07g0209 872 FunFam Multiple RNA-binding domain-containing protein 1 740 846 - -
Bisa07g0209 872 MobiDBLite consensus disorder prediction 289 303 - -
Bisa07g0209 872 CDD RRM6_RBM19_RRM5_MRD1 746 820 - -
Bisa07g0209 872 SMART rrm1_1 747 818 IPR000504 GO:0003723
Bisa07g0209 872 SMART rrm1_1 527 594 IPR000504 GO:0003723
Bisa07g0209 872 SMART rrm1_1 332 405 IPR000504 GO:0003723
Bisa07g0209 872 SMART rrm1_1 5 77 IPR000504 GO:0003723
Bisa07g0209 872 SMART rrm1_1 647 725 IPR000504 GO:0003723
Bisa07g0209 872 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 646 729 IPR000504 GO:0003723
Bisa07g0209 872 SUPERFAMILY RNA-binding domain, RBD 742 825 IPR035979 GO:0003676
Bisa07g0209 872 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 332 420 - -
Bisa07g0209 872 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 331 409 IPR000504 GO:0003723
Bisa07g0209 872 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 526 598 IPR000504 GO:0003723
Bisa07g0209 872 Gene3D - 643 735 IPR012677 -
Bisa07g0209 872 SUPERFAMILY RNA-binding domain, RBD 523 610 IPR035979 GO:0003676
Bisa07g0209 872 SMART rrm2_1 332 405 IPR003954 GO:0003676
Bisa07g0209 872 SMART rrm2_1 647 725 IPR003954 GO:0003676
Bisa07g0209 872 SMART rrm2_1 5 77 IPR003954 GO:0003676
Bisa07g0209 872 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 81 IPR000504 GO:0003723
Bisa07g0209 872 MobiDBLite consensus disorder prediction 162 181 - -
Bisa07g0209 872 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 528 590 IPR000504 GO:0003723
Bisa07g0209 872 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 748 815 IPR000504 GO:0003723
Bisa07g0209 872 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 648 722 IPR000504 GO:0003723
Bisa07g0209 872 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 333 403 IPR000504 GO:0003723
Bisa07g0209 872 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 74 IPR000504 GO:0003723
Bisa07g0209 872 FunFam RNA-binding motif protein 19 3 102 - -
Bisa07g0209 872 Gene3D - 519 622 IPR012677 -
Bisa07g0209 872 Gene3D - 737 847 IPR012677 -
Bisa07g0209 872 SUPERFAMILY RNA-binding domain, RBD 4 89 IPR035979 GO:0003676
Bisa07g0209 872 CDD RRM3_RBM19_RRM2_MRD1 332 405 - -
Bisa07g0209 872 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 746 822 IPR000504 GO:0003723
Bisa07g0209 872 SUPERFAMILY RNA-binding domain, RBD 326 420 IPR035979 GO:0003676
Bisa07g0209 872 MobiDBLite consensus disorder prediction 264 285 - -
Bisa07g0209 872 MobiDBLite consensus disorder prediction 409 440 - -
Bisa07g0209 872 Gene3D - 2 130 IPR012677 -
Bisa07g0209 872 Gene3D - 301 446 IPR012677 -
Bisa07g0209 872 CDD RRM1_MRD1 4 79 - -
Bisa07g0209 872 MobiDBLite consensus disorder prediction 233 248 - -
Bisa07g0209 872 CDD RRM5_RBM19_like 647 727 IPR034423 -
Bisa07g0209 872 MobiDBLite consensus disorder prediction 426 440 - -
Bisa07g0209 872 CDD RRM4_RBM19_RRM3_MRD1 526 597 - -
Bisa07g0209 872 FunFam Multiple RNA-binding domain-containing protein 1 517 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0209 Bisa-ChrBisa07 5447685 5459772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0209 639 848 Eukaryotic Initiation Factors Gene Family AT1G49760 27.354 2.62e-11 65.5