Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g0003 ATGGCACTTATGGCTTCAAATCAGACTTTTGGTGGAAACCACGCAGGGCCAACCAATGATGATTTATACAAGGAATTGTGGCATGCTTGTGCTGGTCCCCTTGTCACTCTTCCTCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTTGAGGCATCGATGCATCAGGGATCAGAGCAGCAAATGCCCTCCTTCAATTTGCCTTCTAAAATTCTTTGCAAGGTTGTCAACGTTCATCTTCGGGCTGAACCTGACACAGATGAAGTCTATGCACAGATAACTTTGCTACCTGAAGCTGATCAAAATGAAGTGACAAGCCCTGATGATCCATTGCCAGAGCCTTCAAGGTGCACAGTCCATTCCTTTTGCAAAACACTTACTGCTTCTGACACCAGCACCCATGGAGGTTTTTCTGTTCTTCGAAGACATGCAGATGATTGTCTGCCACCACTGGATATGTCTCAGCAGCCACCATGGCAAGAACTGGTCGCAACTGATTTGCATGGGAATGAATGGCATTTTCGACATATATTTCGAGGGCAACCTAGGCGCCACTTACTTACCACAGGATGGAGTGTCTTCGTCAGTTCCAAGAAATTGGTGGCTGGTGATGCATTTATATTCCTAAGAGGTGAAAATGGAGAGCTGTGTGTTGGGGTTAGGAGGCTCATGAGACAACAAAGCAATATGCCGTCTTCTGTTATATCCGGTCACAGTATGCATCTTGGTGTTCTAGCCACTGCATCTCATGCCATTGCCACTGGAACACTATTCTCCGTGTTTTACAAGCCCAGAACAAGCCGATCAGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCGAAGTCAGAAGCTTTCTGTTGGTATGAGATTCAAGATGAGATTTGAGGGTGACGAAGTTCCCGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAAATCACTTGTCTGGGCTGATTCTGAGTGGCGATCATTAAAGGTGCAATGGGATGAACCGTCATCAATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTTTGGCTACTGCTCCTGCAAACACACAACCAACCCAGAGAAATAAGAGGGCTCGGCCTCTAACTCTACCTTCAGCAGTACCTGATTCTTCTCTGCATGGTGCGTGGAAATCACCAGTTGAATGTCCACCATTCTCCTATCATGACTCACATGGACGGGACCTCTTTCCATCATCCAAGTTCAATTCTGCTGCAACTAACTTTCTTGGTTTTGGTGGGAATAGCTCTCTGGGGGATGCTTCCAGCAATTCCATATGTTGGTCAAATAGGGTGGAGACCTCTACAGATTATTTTTCACCTATAGCCCTTAAAGAATCTAATGAAAAGGGCACTGGAAATGGCTGTAGGCTCTTTGGAATTCAGCTACTTAAGAATTCCAGTGTAGAAGAAAGTATGCCAACAATCACCTTTTCAGAGAGGGTGGAGGATGATAGGTCTGGACCATGTTTAGATGCTGAGTCTGACCAGCATTCTGAACCATCAAATGCTAATCGACCTTATGTTCCGTCAGTAAATTGTGATGCTGACAAATCAAGCCTTCATTCTCCTCAGGAGTCACAAAGCAGGCAATTAAGGAGCTGCACTAAGGTTCACATGCAAGGACTGGCTGTTGGCAGGGCTGTGGACTTGACCCTGTTTGATGGATATGAGGATCTGCTTAAAAAATTAGAGGAAGTGTTTGACATCAAAGGTGAGCTTGGTGGATCCACAAAAAAATGGCAGGTTGTCTACACTGATAATGAAGACGATATGATGATGGTTGGAGATGATCCGTGGCATGAGTTCTGTACTGTGGTGAGGAAAATTTTCATCTACACACCAGATGAGGTGAAGAAGCTTTCACCCAAAATAGGACTTCCAATCAATGTAGAAGTTAAACCAAGCAAGCTGGATTCTGAAGCAGCACTCAATACTGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 2022 0.4505 MALMASNQTFGGNHAGPTNDDLYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMHQGSEQQMPSFNLPSKILCKVVNVHLRAEPDTDEVYAQITLLPEADQNEVTSPDDPLPEPSRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELCVGVRRLMRQQSNMPSSVISGHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARSQKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSLVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLLATAPANTQPTQRNKRARPLTLPSAVPDSSLHGAWKSPVECPPFSYHDSHGRDLFPSSKFNSAATNFLGFGGNSSLGDASSNSICWSNRVETSTDYFSPIALKESNEKGTGNGCRLFGIQLLKNSSVEESMPTITFSERVEDDRSGPCLDAESDQHSEPSNANRPYVPSVNCDADKSSLHSPQESQSRQLRSCTKVHMQGLAVGRAVDLTLFDGYEDLLKKLEEVFDIKGELGGSTKKWQVVYTDNEDDMMMVGDDPWHEFCTVVRKIFIYTPDEVKKLSPKIGLPINVEVKPSKLDSEAALNTEDQSSIVGPGC 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g0003 673 Gene3D - 124 229 IPR015300 -
Bisa07g0003 673 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 638 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bisa07g0003 673 MobiDBLite consensus disorder prediction 532 549 - -
Bisa07g0003 673 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Bisa07g0003 673 ProSiteProfiles PB1 domain profile. 549 642 IPR000270 GO:0005515
Bisa07g0003 673 MobiDBLite consensus disorder prediction 495 509 - -
Bisa07g0003 673 FunFam Auxin response factor 125 229 - -
Bisa07g0003 673 Pfam AUX/IAA family 543 639 IPR033389 -
Bisa07g0003 673 FunFam Auxin response factor 544 638 - -
Bisa07g0003 673 FunFam Auxin response factor 290 362 - -
Bisa07g0003 673 CDD B3_DNA 125 227 IPR003340 GO:0003677
Bisa07g0003 673 Gene3D - 290 362 - -
Bisa07g0003 673 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Bisa07g0003 673 MobiDBLite consensus disorder prediction 495 549 - -
Bisa07g0003 673 SUPERFAMILY DNA-binding pseudobarrel domain 116 256 IPR015300 -
Bisa07g0003 673 SMART B3_2 127 229 IPR003340 GO:0003677
Bisa07g0003 673 Gene3D - 544 638 - -
Bisa07g0003 673 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa07g0003 673 SUPERFAMILY CAD & PB1 domains 550 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g0003 Bisa-ChrBisa07 71431 104463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g0003 4 667 B3 DNA Binding Superfamily AT1G59750 69.806 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa07g0003 AUX_IAA 6.6e-11 CL0072