Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g2168 ATGAAGCTCACGGTGAAGACTTTGAAAGGAAGCCATTTTGAAATCAGGGTTCAGCCCTCCGACACTATTATGGCTGTTAAGAAGAACATTGAAGATGTACAAGGAAAGGATAATTATCCTTGTGGACAGCAATTGCTGATTCACAATGGCAAGGTGTTGAAAGATGAGACTACACTAGCAGAAAACAAGGTATCTGAAGATGGATTTCTTGTTGTCATGCTTAGCAAGAGTAAAACCTTGGGGTCAGCTGGGACTTCATCCACTCAGCCTGCTAACAATCCAACTACAGCTGTGTCAACTTCAAATTCCACTCCTGTGACTGAATCACCAGTACAAACTCAGGCTGCAAACAACAGAACTGCCACAGATGTCACAACAACAAATGTGCCTATGGATACTTATGGTGAGGCTGCTTCAAATTTAGTTGCTGGTACTAACCTTGAGCAGACTATTCAACAAATTATGGACATGGGGGGTGGCAACTGGGACAGAGAGACAGTTAGACGTGCTCTTCGGGCTGCTTTTAATAACCCAGAGCGTGCTGTAGATTACTTGTATTCTGGGATTCCTGAAACAGCAGAAGTTGCTGAACCAGTTACTCATTTTCCAGTTGGTCAGACAACTGAAACAACTGGGGCCACTGCTGGAGCTGCTTCTGGAGCACCTAACTCATCTCCTTTAAATATGTTTCCACGGGAGGCAAATTCTGGTGCTGGTGCTGGACTTGGATCTCTCGACTTCCTTAGAAACAATCCACAGTTTCAAGCGCTGCGTGCAATGGTGCAAGACAATCCACATATTCTACAGCCTGTGCTTCAGGAGCTTGGAAAGCAGAATCCCAATCTTTTAAGAATGATTCAAGAGCATCATGCTGAGTTTCTCCAGTTAATTAATGAACCAGTTGAGGGTTCCGAAGGTGACATATTTGACCAGCCCGAGCATCATAACGTGGATGTGACGCCAGCTGAGGAGGAAGCAATAGGAAGGCTTGAGGCCATGGGATTTGATAGAGCCATAGTTATAGAGGCATTTCTGGCATGTGACCGGGATGAACAAATGGCAGCCAACTATTTGCTGGAGAATGCTGCAGAAGATTTTGAAGATTGA 1107 0.4481 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSEDGFLVVMLSKSKTLGSAGTSSTQPANNPTTAVSTSNSTPVTESPVQTQAANNRTATDVTTTNVPMDTYGEAASNLVAGTNLEQTIQQIMDMGGGNWDRETVRRALRAAFNNPERAVDYLYSGIPETAEVAEPVTHFPVGQTTETTGATAGAASGAPNSSPLNMFPREANSGAGAGLGSLDFLRNNPQFQALRAMVQDNPHILQPVLQELGKQNPNLLRMIQEHHAEFLQLINEPVEGSEGDIFDQPEHHNVDVTPAEEEAIGRLEAMGFDRAIVIEAFLACDRDEQMAANYLLENAAEDFED 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g2168 368 SUPERFAMILY XPC-binding domain 242 308 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bisa06g2168 368 Pfam XPC-binding domain 245 300 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bisa06g2168 368 SMART ubq_7 1 75 IPR000626 GO:0005515
Bisa06g2168 368 SUPERFAMILY UBA-like 313 363 IPR009060 GO:0005515
Bisa06g2168 368 Gene3D - 234 301 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bisa06g2168 368 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 321 361 IPR015940 -
Bisa06g2168 368 FunFam UV excision repair protein RAD23 homolog 314 362 - -
Bisa06g2168 368 NCBIfam UV excision repair protein Rad23 1 364 IPR004806 GO:0006289
Bisa06g2168 368 Gene3D - 140 190 - -
Bisa06g2168 368 SMART uba_6 147 187 IPR015940 -
Bisa06g2168 368 SMART uba_6 323 360 IPR015940 -
Bisa06g2168 368 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 356 - -
Bisa06g2168 368 SUPERFAMILY UBA-like 144 195 IPR009060 GO:0005515
Bisa06g2168 368 FunFam UV excision repair protein RAD23 1 80 - -
Bisa06g2168 368 PRINTS DNA repair protein Rad23 signature 271 293 IPR004806 GO:0006289
Bisa06g2168 368 PRINTS DNA repair protein Rad23 signature 334 348 IPR004806 GO:0006289
Bisa06g2168 368 PRINTS DNA repair protein Rad23 signature 349 364 IPR004806 GO:0006289
Bisa06g2168 368 PRINTS DNA repair protein Rad23 signature 317 333 IPR004806 GO:0006289
Bisa06g2168 368 CDD Ubl_Rad23 1 74 - -
Bisa06g2168 368 Gene3D - 1 80 - -
Bisa06g2168 368 SMART CBM 243 286 IPR006636 -
Bisa06g2168 368 MobiDBLite consensus disorder prediction 80 117 - -
Bisa06g2168 368 Pfam UBA/TS-N domain 147 185 IPR015940 -
Bisa06g2168 368 Pfam UBA/TS-N domain 323 358 IPR015940 -
Bisa06g2168 368 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Bisa06g2168 368 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 145 188 IPR015940 -
Bisa06g2168 368 FunFam UV excision repair protein RAD23 B 234 301 - -
Bisa06g2168 368 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Bisa06g2168 368 Gene3D - 314 363 - -
Bisa06g2168 368 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Bisa06g2168 368 CDD UBA1_Rad23_plant 141 190 - -
Bisa06g2168 368 FunFam UV excision repair protein RAD23 homolog 140 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g2168 Bisa-ChrBisa06 65959894 65964810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g2168 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.61e-06 45.8