LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa06g2153	ATGCCTTCAAGACCCTTCCCTCCATCCCCAAGTCCCAATTTTTTCACCAAAAACAGATTTCTCTTTCTGTCACTCACCATCTCATCGTCTCTTGTAATTTTCTGCTCAGTGTTTTACTTTCTCTACCATCTCTGGCATTCTCTTGATCACCGAGCTAAGACGACACCGTTTCACGCAAACGCTCCCTTAAAGCTCCAGAGCTTCTCCTACAAAGAGCTAAAGCAAGCCACCAATGGCTTCCACACTGAAAACGTCATTGCTAAAGGTGGGTCTAGCACCGTTTTTAAAGGAACGCTTCAAAATGGGAACTTTATTGCTGTTAAGCGTCTGGACTCTTTGTCTTTACAAACAGAGCAAGAGTTTCAGAATGAGCTTCAGATTCTTGGTGGGTTAAGATCTCCTTTCCTTGTGACCCTTCTGGGATATTGTGTGGAAAAGAACAGTAGAGCTTTGGTGTTTGAGTATATGCCTAAGAGAAGCTTGCAGGATTCCCTCTTTGGAGATTGTGGGTGTCTGAGTTTGAGCTGGGAAAAAAGGTTTCTTGTGATACTGGATGTTGCTAGAGCTTTGGAATTCTTGCACCTTGGATGTGACCCACCAGTGATCCACGGGGATGTCAAGCCAAGCAATGTTCTGCTGGATGAAGAACACCGTGGGAAGCTTTCGGATTTCGGGTTGTCAAGGATTAAAATGGAGGAGGGTGAGTTTGGCGGGGATTTGTTCAGCCAGGACTTGAGTAATAAGAGTCAAGAGCTATGGAAAAGCCAAGAGTTTTCAGGTAATTTGACTGCAGAAAATGAAGCCATTAGTACTCCTGATGAGTGTGTTGATGAAGTAGATTTTGCTCTAGCTTTGCAGGCTGCTTCTTCATCCAAAAATAGCAGGGTAGGTTTTAATTTTAGAGCTTTGGACTTGAGTTCTTTGAACTATAATGCCAGTGTTGCAGGTGAGAATGAAACTATTAGGATTGGTAGTGCCAAGGGGAAGGAAATTTCAACTTTTGACAAGTTTGTTCCTTGTGATGATGAGTTTTCCGGGTTTGATTGTAGTAATGAGTTAGGTGTTAACTTTTCCATCCAACGGGAGTCAAGTTTAGCAGAAGGGATTAGTTTTCCACAAGGTAACGAACCAAGGTTTGAGCAGGATTGCTTTCAATGGAAGATAACTGTAGGAAACCAAAAGAATGTTCACGTTTCCTCAGCAGAGGAAGAGAAGGCAAATGAAAAACAATGGGGAAAGGACTGGTGGTGGAGACAGGATGAAAGTGGAGAATTATGCAGTAAAGATTATGTCATGGAGTGGTTAGGGAGTCAAATTTGTGATCCATCAAACCCTGATTGGGTTGAAGAAAAGCAGAACATTCATGAGAGAACAGAGCTAGAAAACTCAAGTCCTGTTGTTGATAAACCAGATGATGGGGTTGAGAACAAAGAATCATGGGAGAAGAAGAAAAATCTCAAGAAGATGCAAGAGTGGTGGAAGGAAGAACACCTAGCTGACTTAAGCAAGAAAAGCTGGAAGCTGAAAAATCTCCAAACCAAGTGGAAGAAAGGGTTCAAAGTACCAAATTTTCATGTGGGTAAAAGGGTTTATCTTCTTTGCAGATGTAGGAACTTCAAAAGGAAGGGTGTGAGTGAGTGTGGTCTAAACAGGGAATTTAGTTTCAGAAGAACTCACATCCATTCCAATGGCAGTGACATGTGGAGCGGAGATATTTTCAGCAGCACAACAAGCATGAGAGGGACACTGTGTTATGCTGCTCCAGAATATGGTGTTTCTGGATTCCAAATGGAGAAGGCTGACATTTACAGTTTAGGAGTATTAATCCTTGTGACTGTTTCAGGAAGAAGACCATTGCATGTTCTTGAATCCCCCATGAAGCTGGAGAAGGCTAACTTAATAAGCTGGTGTAGGCACTTGGCTGAATCTGGTGGTGACATTTCAGAGCTTGTAGATGAGAGATTGAATGGAGATTACAACAAGGAGCAAGCAAGCTTGTGTCTCAACATTGCACTTTGTTGCTTGCAGAAAACTCCAGAGTTGAGGCCAGACATTGGTGATATTGTAAAGATTTTGAAAGGGGATATGGATCTCCCATCACTTCCATTTCAGTTCTCTCCTTCTCCTCCTTCCAAGTTGTACAGCAAATCAAGGAGAACAAAACAGAACTGTGCTGCAGAATAG	2184	0.4249	MPSRPFPPSPSPNFFTKNRFLFLSLTISSSLVIFCSVFYFLYHLWHSLDHRAKTTPFHANAPLKLQSFSYKELKQATNGFHTENVIAKGGSSTVFKGTLQNGNFIAVKRLDSLSLQTEQEFQNELQILGGLRSPFLVTLLGYCVEKNSRALVFEYMPKRSLQDSLFGDCGCLSLSWEKRFLVILDVARALEFLHLGCDPPVIHGDVKPSNVLLDEEHRGKLSDFGLSRIKMEEGEFGGDLFSQDLSNKSQELWKSQEFSGNLTAENEAISTPDECVDEVDFALALQAASSSKNSRVGFNFRALDLSSLNYNASVAGENETIRIGSAKGKEISTFDKFVPCDDEFSGFDCSNELGVNFSIQRESSLAEGISFPQGNEPRFEQDCFQWKITVGNQKNVHVSSAEEEKANEKQWGKDWWWRQDESGELCSKDYVMEWLGSQICDPSNPDWVEEKQNIHERTELENSSPVVDKPDDGVENKESWEKKKNLKKMQEWWKEEHLADLSKKSWKLKNLQTKWKKGFKVPNFHVGKRVYLLCRCRNFKRKGVSECGLNREFSFRRTHIHSNGSDMWSGDIFSSTTSMRGTLCYAAPEYGVSGFQMEKADIYSLGVLILVTVSGRRPLHVLESPMKLEKANLISWCRHLAESGGDISELVDERLNGDYNKEQASLCLNIALCCLQKTPELRPDIGDIVKILKGDMDLPSLPFQFSPSPPSKLYSKSRRTKQNCAAE	727

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa06g2153	727	PANTHER	OS07G0586332 PROTEIN	11	720	IPR044576	-
	Bisa06g2153	727	Pfam	Protein kinase domain	80	230	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa06g2153	727	ProSiteProfiles	Protein kinase domain profile.	80	701	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa06g2153	727	MobiDBLite	consensus disorder prediction	707	727	-	-
	Bisa06g2153	727	Gene3D	Phosphorylase Kinase; domain 1	45	155	-	-
	Bisa06g2153	727	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	201	213	IPR008271	GO:0004672\|GO:0006468
	Bisa06g2153	727	Gene3D	Transferase(Phosphotransferase) domain 1	544	698	-	-
	Bisa06g2153	727	Gene3D	Transferase(Phosphotransferase) domain 1	156	265	-	-
	Bisa06g2153	727	SMART	serkin_6	80	691	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa06g2153	727	FunFam	Receptor-like serine/threonine-protein kinase At4g25390	49	155	-	-
	Bisa06g2153	727	SUPERFAMILY	Protein kinase-like (PK-like)	59	712	IPR011009	-
	Bisa06g2153	727	MobiDBLite	consensus disorder prediction	455	479	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa06g2153	Bisa-ChrBisa06	65833647	65835830	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa06g2153	537	692	Receptor kinase-like Gene Family	AT3G58690	30.128	1.97e-13	70.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XI	Bisa06g2153		Pkinase	1.6e-25	CL0016