Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g2110 ATGTCAACTAGTTCGAGTGCAGTGATAGCAGGACCGTCGTCGGACGAAGTACTCCGGCCACCAGCTATGGTGGTTTCCGGCGAGCCAAGTGAATCTCCATCCTCGTCATTCTCCTTGTCCAATTTGACTCAGGCGTTTCCTTTCTCTTCTGGAAACCCTAGAATAGAGGAGACTAGGGGCGTCATGCATCTCTATCGTGAGGATCCTACTTCATCTTCGGCTTCTGATCTTCCGGTGGGACGGAAGCCACTTGTCTGTGTGCTTGGAGTGCCCAATTACATGACATATGCGGATTTCTGCCAGTTCTGTGGTTCATTTATTCAGCATATCTTAGAGATGCGGATTGTCAGAAATGATGGGATGGAGGACCAGTACAGTGTTTTAATTCAGTTTGATGACCAAGACTCTACAGATGGTTTCTATAAGCATTATAATAGGCGCCGATTCTCATCACTAGAGGTGGAGGTTTGCCATGTTTTTTTCACATTTGATGTGCAGTACACTGGCTTAATTGAACATGCACAAGCATCTAATGCCAGTTCAACTGAACAGCCTACATGTCCAGTCTGCCTGGAGCGATTGGATCAAGATACAAGTGGAATTCTTACAACTATATGCAATCATTCCTTCCATTGTTCCTGCATTTCAAATTGGGCAGATTCATCCTGTCCAGTATGCCGGTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACAACTGAGAACCTTTGCATATGTCTTATTTGTGGGTTTGTTGGCTGTGGAAAATATAAAGCAGGACATGCTATACTACACTGGAAAGAGACAGAGCATTGCTACTCCCAAGAAGTGGAAACACAACGAGTATGGGATTATGTGGGAGACAACTATGTTCATAGACTAATCCAGTCCAAAACTGATGGGAAGTTGGTTGAGTTAAACTCTCACTGCACACATACAGATAATGGGTGGGGAAGTTGCAGCTGTGAAGACAAAGCTATGAGCGAGGCTATACTTAACAGTAGAGTTGAAGCTATTGTCAACGAGTACAATGATTTGCTTGCTACTCAACTTGAAAACCAAAAATTATACTTTGAGTCCTTACTACAAGAAGTAAAAGAAGAAACTGAAAGAGAGATTTCCAGAGCTGTTGAGAAGGCTGTCACTGTTAAACTGCAGAAGATGCAGTCCAAGCTTGACAGATGTTATAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTCTGAAAAATCAGGAGATCTGGAAAGCTAAGATACTTGAGATTGAAGAAAGGGAGAACAAAGCTATAAAACTGAAGGATGACAAAATAAGGGCCCTGGAAGAGCAGCTTAGAGATCTCATGGATTATCTTGAAAACGGGAAAACGGTCGAACAGCTGGCCAAGATGAATGAAATTAAAGATGGAACAGTCTTTCCCATATCGATAGATTCCTCTTCTACTAGTGGCTCTGAACTGGGCAAGAAAGCTAATAACAAAACAAACTAA 1503 0.4205 MSTSSSAVIAGPSSDEVLRPPAMVVSGEPSESPSSSFSLSNLTQAFPFSSGNPRIEETRGVMHLYREDPTSSSASDLPVGRKPLVCVLGVPNYMTYADFCQFCGSFIQHILEMRIVRNDGMEDQYSVLIQFDDQDSTDGFYKHYNRRRFSSLEVEVCHVFFTFDVQYTGLIEHAQASNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISNWADSSCPVCRYCQQQAEKSICFVCQTTENLCICLICGFVGCGKYKAGHAILHWKETEHCYSQEVETQRVWDYVGDNYVHRLIQSKTDGKLVELNSHCTHTDNGWGSCSCEDKAMSEAILNSRVEAIVNEYNDLLATQLENQKLYFESLLQEVKEETEREISRAVEKAVTVKLQKMQSKLDRCYKEKKFLDDLNENLLKNQEIWKAKILEIEERENKAIKLKDDKIRALEEQLRDLMDYLENGKTVEQLAKMNEIKDGTVFPISIDSSSTSGSELGKKANNKTN 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g2110 500 Coils Coil 352 390 - -
Bisa06g2110 500 ProSiteProfiles Zinc finger RING-type profile. 187 227 IPR001841 -
Bisa06g2110 500 Pfam Zn-finger in ubiquitin-hydrolases and other protein 238 297 IPR001607 GO:0008270
Bisa06g2110 500 Pfam BRCA1-associated protein 2 78 174 IPR011422 -
Bisa06g2110 500 ProSiteProfiles Zinc finger UBP-type profile. 221 314 IPR001607 GO:0008270
Bisa06g2110 500 Pfam Ring finger domain 186 227 IPR001841 -
Bisa06g2110 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 228 IPR013083 -
Bisa06g2110 500 PANTHER BRCA1-ASSOCIATED PROTEIN 29 497 - -
Bisa06g2110 500 SUPERFAMILY RING/U-box 177 228 - -
Bisa06g2110 500 SMART ring_2 187 226 IPR001841 -
Bisa06g2110 500 Coils Coil 410 455 - -
Bisa06g2110 500 MobiDBLite consensus disorder prediction 1 38 - -
Bisa06g2110 500 CDD RRM_BRAP2_like 85 166 - -
Bisa06g2110 500 CDD RING-H2_BRAP2 185 228 IPR047243 -
Bisa06g2110 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 309 IPR013083 -
Bisa06g2110 500 SMART Zf_UBP_1 237 286 IPR001607 GO:0008270
Bisa06g2110 500 SUPERFAMILY RING/U-box 203 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g2110 Bisa-ChrBisa06 65194701 65199603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g2110 183 227 C3H Transcription Factor Family AT1G72220 48.936 1.81e-07 51.6