Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g2025 ATGAGTGCTTCAGAGGAGTCTCTTCCCCGGAGTCAGTTTCCCACGAAGCATAAAGAAATTTCTGAAATGGAATGCGAATACCCACCATTCAAGAAGCCAAGAATTTCGGCGACGTTTCCGAATTCTGGACTGAACGAAGCAAGGACCCGCTATTTCAAGACACAACTCTGCAGAAAATTCAGACTAGGAATGTGTACTCTTGGGTCCAGATGGAAACAGTGCTCCTATGGATCCACCTGCCGCTTCCTTCATGCAAGGCCTGATGGTATGAATTCAAGAGAGAATGCAATGGTTGAGGTGATTCCTAAATATGATCAAGTAGAAATCAACAAGAGTGTGTCCAATGAGAGTTTTGATGCTGAAGTGAATCAAAAGAGAGTGATGCAGAAAACAAAGCTGTGTAACAGTTGGGAGATCAAAGGGTATTGCCCGTTTGGAATGACCTGTCGCTTTGCTCATGGACAAACAGAATTAGGGAAAGTTGATGGCTATTCAACTTCAGAATGCAGGGTAATGCAAACTTGTGCTTCTACTGCTACTCCTACAGATGCATCAATGGAGGGTGGTCCTTTGCTTAAGAAGGAACCTTGTGCCCTAAACTGCAGATTCAAGACAAATGAACTACAAAAGATCAGTCGCATCTATGCTGATTGGATTTAA 660 0.4333 MSASEESLPRSQFPTKHKEISEMECEYPPFKKPRISATFPNSGLNEARTRYFKTQLCRKFRLGMCTLGSRWKQCSYGSTCRFLHARPDGMNSRENAMVEVIPKYDQVEINKSVSNESFDAEVNQKRVMQKTKLCNSWEIKGYCPFGMTCRFAHGQTELGKVDGYSTSECRVMQTCASTATPTDASMEGGPLLKKEPCALNCRFKTNELQKISRIYADWI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g2025 219 ProSiteProfiles Zinc finger C3H1-type profile. 51 87 IPR000571 GO:0046872
Bisa06g2025 219 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Bisa06g2025 219 SMART c3hfinal6 51 86 IPR000571 GO:0046872
Bisa06g2025 219 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 155 IPR000571 GO:0046872
Bisa06g2025 219 PANTHER CCCH ZINC FINGER/TIS11-RELATED 123 172 IPR045877 GO:0003729
Bisa06g2025 219 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Bisa06g2025 219 SUPERFAMILY CCCH zinc finger 126 159 IPR036855 GO:0046872
Bisa06g2025 219 FunFam zinc finger CCCH domain-containing protein 15-like 122 161 - -
Bisa06g2025 219 Gene3D - 122 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g2025 Bisa-ChrBisa06 63764090 63766888 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g2025 128 172 C3H Transcription Factor Family AT1G68200 47.917 3.69e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa06g2025 zf-CCCH 1.1e-08 CL0537