Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1994 ATGGATGTTAACTCTTTGGGACCAAATAGAAACACCCAAACCGACCAATATCCTTTGCTTATGGAGCATCCAGAAGCCCATAATGGCCACCAGCACATAATTGACATTACAAGAAATGGTAATGACCTATCCAGCTCATCTCAAGATGATCAACATCCTGAAATGCAGTTGCCACATAATGAAGACCAACCATCGGATGGTATGCAAGTCCCCACTCATCAAACATCTTCATCTTCCTCATCCAGATTAAACTTTAGAAATTCCTCATCAACAAGAAGAGGTGAGGGATACAGTCATCGCAGAAGAAGCCCACTGAATTCTGGATTATGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTATTGTTGTCTTGTCATTATCCAGGAATGAAAATCCCCAAGCCCCATTATTTGCATGGGTCGTGGGTTATGCATCTGGTTGTGTTGCTACACTCCCTATTCTTTACTGTCGTTATCGAAACCGTAATCAAGGCACTGGACAAGACTTATCTCAACCAACTCAAGGATCTGGAAGCAATCCTCCAGAACCAACTTCTTATACTGCCATCTCTGTTGCTCATGTTTCAGATGAAGAGAATACTCGTGCTACAGAATCAGCTACAAGGAACACTGAGATTCCTGGAGCATTTAGTTCTAGGTTTAATGGAATAGTAGACCATTTCAAGATGGCCTTAGATTGCTTCTTTGCAGTGTGGTTTGTCGTGGGCAATGTTTGGATCTTTGGAGGTCATTCTTCTCCTTCTGATGCTCCAAAATTATATAGGTTATGTATAGTGTTTCTCACCTTCAGCTGCATTGGATATGCTATGCCGTTTATACTATGTGCAACAATTTGTTGCTGCCTACCTTGCATTATTTCTGTTTTGGGAATTCGAGAGGACTTTTCTCAAACTAGGGGAGCAACAGTGGAATCTATTAATGCTCTGCCAGTATACAAGATCAGATTGAAGAAAAATGAAAATAGTGATGATCAAGGTGTCAATACTGCTAGAGATGAAGGTGGGATCCTGGCTGCTGGGACAGACAAGGAGCGAATTATATCTGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGCAGATGATGATGAGCTCAGAGAGCTACCCTGTATCCATGTCTTTCATGTTGAGTGTGTTGACAAATGGTTAAAGATAAATGCATCTTGCCCTCTTTGTAAATGTGAGGTTGGTACAATTGGAGTGCCGCCTTCAGCAGGGGAGTCCAGTCAGCATTAG 1275 0.4188 MDVNSLGPNRNTQTDQYPLLMEHPEAHNGHQHIIDITRNGNDLSSSSQDDQHPEMQLPHNEDQPSDGMQVPTHQTSSSSSSRLNFRNSSSTRRGEGYSHRRRSPLNSGLWISVELVVTVSQIIASIVVLSLSRNENPQAPLFAWVVGYASGCVATLPILYCRYRNRNQGTGQDLSQPTQGSGSNPPEPTSYTAISVAHVSDEENTRATESATRNTEIPGAFSSRFNGIVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVESINALPVYKIRLKKNENSDDQGVNTARDEGGILAAGTDKERIISGEDAVCCICLAKYADDDELRELPCIHVFHVECVDKWLKINASCPLCKCEVGTIGVPPSAGESSQH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1994 424 Pfam Ring finger domain 365 406 IPR001841 -
Bisa06g1994 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 411 IPR013083 -
Bisa06g1994 424 SMART ringv_2 364 406 IPR011016 GO:0008270
Bisa06g1994 424 MobiDBLite consensus disorder prediction 37 53 - -
Bisa06g1994 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 409 - -
Bisa06g1994 424 FunFam E3 ubiquitin-protein ligase 348 413 - -
Bisa06g1994 424 MobiDBLite consensus disorder prediction 37 103 - -
Bisa06g1994 424 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Bisa06g1994 424 SUPERFAMILY RING/U-box 356 412 - -
Bisa06g1994 424 MobiDBLite consensus disorder prediction 62 92 - -
Bisa06g1994 424 SMART ring_2 365 405 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1994 Bisa-ChrBisa06 63161728 63164743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1994 1 410 C3H Transcription Factor Family AT1G80400 57.471 1.98e-170 482