Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1871 ATGGCAATGTCCTGCAAGGATGGTAAATTAGGGATGGACAACGGCAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCCCTTGAGAGGTTTTACCACGAATGCCCCAAACCTAGTTCCATGCGTCGCCAGCAACTTATCCGCGAGTGCCCAATTCTCTCAAACATTGAGCCGAAGCAAATTAAAGTTTGGTTTCAGAACAGAAGATGTAGAGAGAAGCAAAGGAAAGAGTCTTCGCGTCTTCAAACTGTGAACAGGAAGCTTACAGCCATGAACAAGCTTCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAATTGGTGTACGAAAATGGCTACTTTCGCCAACACACCCAAAATGGGACACTTGCAACTAAGGACGCAAGCTGTGAATCTGCGGTGACTAGTGGTCAACACAGTTTGACAACCCAGCATCCTCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCGAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCTATTTCTCATGGTTGCACTGGCGTGGCAGCACGAGCTTGTGGCCTAGTGGGTCTAGAACCGACAAGGGTTGTAGAAATCCTCAAGGATCGTCCTTCATGGTTTCGTGATTGCCGAGCTGTTGATGTTCTGAATGTGATGCCCACAGCAAATGGTCGAACCATAGAGCTGCTTTATATGCAGCTATATGCACCTACAACATTGGCACCTGCTCGAGATTTCTGGTTGTTGCGCTATACTTCTGTTTTAGAAGATGGGAGCCTTGTGATCTGTGAGAGGTCTCTTAACAATACTCAAAATGGTCCAAGCATGCCACCTGTGCAGCATTTTGTGAGAGCAGAGATACTTCCTAGTGGTTACCTCATAAGACCTTGTGAAGGGGGTGGTTCTATCATCCACATTGTTGATCACATGGATTTGGAGCCATGGAGTGTGCCAGAAGTACTGCGTCCACTGTATGAATCATCAACAGTGATGGCTCAGAAGACAACTATGGCGGCCTTGCGTCAACTAAGACAGATATCTCATGAGGTTTCTCAGTCTAATGTCAATGGGTGGGGTAGACGACCTGCAGCTCTACGAGCACTTAGCCAGAGGCTAAGCAGGGGTTTCAATGAGGCACTAAATGGATTTACTGATGAAGGATGGTCAATGATTGGCAATGATGGTGTAGATGATGTTACAATCTTGGTGAATTCATCCCCTGACAAGTTAATGGGGTTGAATCTCTCCTTTGCCAATGAATTTCCATCTGTCAGTAATGCAGTCTTATGTGCGAAAGCATCAATGCTGTTGCAGAATGTGCCTCCAGCCATTCTTCTCAGGTTTTTGCGGGAGCACAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCTGTTAAAGTTGGCCCTTGTAGCTTAGCTGGATCTCGTGTTGGAAATTATGGAGGCCAAGTTATACTTCCTCTTGCACACACTATTGAGCATGAAGAGTTTTTGGAAGTCATTAAATTGGATGGAATTGCTCATTCTCCTGAAGACACAATAATGCCAAGAGAGATGTTTCTTTTGCAACTCTGCAGTGGAATAGATGAGAATGCTGTTGGCACCTGTGCCGAACTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCCACTTTACCTTCTGGATTTCGCATCATTCCACTTGATTCTGGGAAGGAAGCCTCCAGCCCAAATCGCACCCTTGACCTTGCATCTGCTCTTGATATTGGCCCAACTGGAAATAAGGCATCTAATGATCATGCTGGAAATTCGGGATGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGACCATGTAGCAATCATGGCACGTCAATATGTTCGGAGTATTATATCATCAGTCCAAAGGGTGGCATTAGCTCTTTCTCCATCTCATTTGAGTTCGCATGCTGGGCTTAGGCCTCCACTGGGTACTCCTGAAGCCCAAACACTCGCTCGTTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTGTTAAAATCTGGTAATGAGGGAAACGAGTCCATTCTCAAGGCCTTGTGGCATCACTCAGATGCACTACTGTGCTGCACTTTAAAGGCAATGCCAGTTTTCACTTTCGCCAACCAGGCAGGGCTTGACATGCTGGAGACTACCTTAATTGCTCTTCAAGACATAAGTTTGGAAAAAATATTTGATGATCATGGTCGAAAGATCCTTTGTTCAGAGTTTCCCCAGATTATACAACAGGGTTTTGCATGCCTTCAAGGTGGTATATGTCTCTCGAGCATGGGGCGACCTGTCTCATATGAGAGAGTGGTGGCATGGAAGGTGCTGAATGAAGAAGAGAGTGCTCATTGCATCTGCTTTATGTTTATGAACTGGTCCTTCGTTTGA 2514 0.4574 MAMSCKDGKLGMDNGKYVRYTPEQVEALERFYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNGTLATKDASCESAVTSGQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPTRVVEILKDRPSWFRDCRAVDVLNVMPTANGRTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLNNTQNGPSMPPVQHFVRAEILPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVMAQKTTMAALRQLRQISHEVSQSNVNGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMIGNDGVDDVTILVNSSPDKLMGLNLSFANEFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAVKVGPCSLAGSRVGNYGGQVILPLAHTIEHEEFLEVIKLDGIAHSPEDTIMPREMFLLQLCSGIDENAVGTCAELIFAPIDASFADDAPTLPSGFRIIPLDSGKEASSPNRTLDLASALDIGPTGNKASNDHAGNSGCMRSVMTIAFEFAFESHMQDHVAIMARQYVRSIISSVQRVALALSPSHLSSHAGLRPPLGTPEAQTLARWICNSYRCYLGVELLKSGNEGNESILKALWHHSDALLCCTLKAMPVFTFANQAGLDMLETTLIALQDISLEKIFDDHGRKILCSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEESAHCICFMFMNWSFV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1871 837 CDD bZIP 68 107 - -
Bisa06g1871 837 Gene3D - 11 82 - -
Bisa06g1871 837 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Bisa06g1871 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Bisa06g1871 837 Gene3D - 196 377 IPR023393 -
Bisa06g1871 837 SUPERFAMILY Homeodomain-like 15 77 IPR009057 -
Bisa06g1871 837 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Bisa06g1871 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Bisa06g1871 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Bisa06g1871 837 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
Bisa06g1871 837 CDD START_ArGLABRA2_like 154 369 - -
Bisa06g1871 837 Pfam START domain 160 368 IPR002913 GO:0008289
Bisa06g1871 837 Pfam MEKHLA domain 694 836 IPR013978 -
Bisa06g1871 837 SUPERFAMILY Bet v1-like 159 367 - -
Bisa06g1871 837 SMART START_1 159 369 IPR002913 GO:0008289
Bisa06g1871 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Bisa06g1871 837 Coils Coil 85 112 - -
Bisa06g1871 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 837 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1871 Bisa-ChrBisa06 61065258 61071904 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1871 1 789 Homeobox Transcription Factor Family AT1G52150 85.354 0.0 1408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa06g1871 START 7.2e-53 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa10g1747 10 47975774 47981141 Bisa06g1871 06 61065258 61071904 CCT
Bisa06g1871 06 61065258 61071904 Bisa06g1871 06 61065258 61071904 ECH