LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa06g1810	ATGGCAGGGAAGTTTGGAAGCAATTGGGCTTGGTGCTTCTTGTTATGGTTTCTCTTTGCTTCCGTGTTTGCCTCTGAAGAATTTAATGGAAAATCCATAGTTCAAGGCACAGAGAACTCTATACTTCACAAACAAGCCAGAAGGAAACTGGATGATGTAGGAGGCTCTATCAGCGTTGACTGTGGCCTACCTGACGAGCTTCACTATACTGACCCCAAAACTAAGATTCACTACGATTCAGATTCAGAATTCATCAACACAGGAACAAACAGAAACATATCAGCCAAGTTCATTTCCGAAACTCCTCACCAAATATTTTCAAATGTGAGAAGCTTCCCTGAGGGTAAAAGGAATTGCTACACACTAAGACCTCCAAGAGGCAGAGAGACTGTTTACTTGGTGAGAGCATATTTCATGTATGGTAACTATGACGGTCTGAATTCGCTGCCCCAATTTGAACTTTACCTGGGAGTTAATTCGTGGGACCCTGTGAAGTTTGACAATGCTTCTCATGTTGTGATCAAGGAGATTTTACACGTGCCGGTGACGGATGATGTGGATGTTTGCTTATTGAACACTGATTCAGGAACTCCTTTTATATCAGCATTGGAACTCAGGCATATCCATAATTCAACTTATACCCAGAATCGATCTTTAGCTCTGTATCACCGTTTTGACTTTGGTTCTACAACCAATACTATAGTAAGGTTTGAAGAAGATACCTATGATAGAATGTGGTATCCTTACAATTTACCTGATTGTACACCACTTAATACTTCCTTCCCCATTGATACCCTGAGCACTACTGAATATCATTATCAACTACCATCAACAGTAATGAAAACTGCTGTGAGGCCAACAAATTCTAACCATCCCCTCGAGTTTCAATTCGTAACTGGTGATCCTATTTCGAAGTTCTATGTTTACATGCACTTTGCTGAGATTGAGGAGCTCCCGAGAAATGAATCCAGGGAATTCAGCATTACATTGAATGGCGAATTGTTTAAGGAGTCTGTAGTTCCTAGTTATTTGAAATCTACTACAGTAAGTAATAAAGAGCCCATCAGCGCACCAAATAAGCTCATGTTCTCTATGAACAAGGAAACAAAAGCTACACGTCCCCCAATTCTCAATGCTATGGAGATATACATTGATAAAGATTTCTTCCAGGAACCTACAGACCAAGAAGATGTCAAAGCTATCACGGACATCAAAGAAAGCTACACATTGGCTAGACCATGGCAAGGAGATCCATGTGCACCGATGAATTATTCTTGGGATGGACTCAACTGCAGCTACCATGGATATCAAGCGCCCTCCATAATTTCACTGGACTTATCAAACAATAGCATAGATGGACCACTGCCTGCTTTCTTGTCAGATTTGCCACAGTTGAGGACTCTAAATCTATCAGGAAACAGGCTCTCAGGTGTAATTCCACCACTTCTCGTGGAAAGATCAAAAAATGGGTCACTTACATTGAGGTGTTTTTTTGCTGAACTCTTAATGCGAGTCCATCATAAGAACTTAGCTTCATTCCTTGGATACTGTAACGAAGGTGGACACGCCGCAATCATTTATGAATACATGGCTAATGGGAACTTGGGACAGTGCCTTTTAGGTTCAAGGGAAGAATTATCGAGTTGGAAACGTAGGATTCAAATAGCAGTTGATGCAGCTCAAGGGATCGAGTATTTGCATCATGGCTGCAAGCCTCCCATAATCCACAGAGACATAAAGACTGCAAACATTTTATTGAATGAGAAAATGCAGGCCAAAGTAGCTGATTTCGGGTTATCAAAGTTCTATGCAACTGAAAGCGAAAGTCATATATCGACCAATGTTGTTGGCACATTTGGATACCTTGACCCGGAATACTACACATCCAACCGGCTTACAGAGAGAAGCGATGTTTACAGTTTTGGCATCGTCCTTTTGGAGCTCATTACAGGACGGCCAGCGATAATAAAAGGTCATGAGAACACTCACATCGTGAACTGGGTTACCTCTTTTCTTGCAAGAGGAGATTTAGAACAGATTGTCGATCCGAGGCTGCATGAAGAGTTCGACTATGGCTCCATGTGGAAGGCTGTGGAAGTAGCAGTAGCTTGTGTGCCTCCAGTTGCTATCCAAAGGCCTACCATGAGTTACGTCGTCGCACAGTTAAAAGAGTGCTTCGAAATGGAAGCAGTTCGTGATCAAACACGAGGCACGAATGATAAAATTCTGAGGCCAAGCAGCTCGATCGGGATGAATGTGGTCGATCTTCAAGATGCAGCTGGTCCAGAAGTAAGATAG	2298	0.4225	MAGKFGSNWAWCFLLWFLFASVFASEEFNGKSIVQGTENSILHKQARRKLDDVGGSISVDCGLPDELHYTDPKTKIHYDSDSEFINTGTNRNISAKFISETPHQIFSNVRSFPEGKRNCYTLRPPRGRETVYLVRAYFMYGNYDGLNSLPQFELYLGVNSWDPVKFDNASHVVIKEILHVPVTDDVDVCLLNTDSGTPFISALELRHIHNSTYTQNRSLALYHRFDFGSTTNTIVRFEEDTYDRMWYPYNLPDCTPLNTSFPIDTLSTTEYHYQLPSTVMKTAVRPTNSNHPLEFQFVTGDPISKFYVYMHFAEIEELPRNESREFSITLNGELFKESVVPSYLKSTTVSNKEPISAPNKLMFSMNKETKATRPPILNAMEIYIDKDFFQEPTDQEDVKAITDIKESYTLARPWQGDPCAPMNYSWDGLNCSYHGYQAPSIISLDLSNNSIDGPLPAFLSDLPQLRTLNLSGNRLSGVIPPLLVERSKNGSLTLRCFFAELLMRVHHKNLASFLGYCNEGGHAAIIYEYMANGNLGQCLLGSREELSSWKRRIQIAVDAAQGIEYLHHGCKPPIIHRDIKTANILLNEKMQAKVADFGLSKFYATESESHISTNVVGTFGYLDPEYYTSNRLTERSDVYSFGIVLLELITGRPAIIKGHENTHIVNWVTSFLARGDLEQIVDPRLHEEFDYGSMWKAVEVAVACVPPVAIQRPTMSYVVAQLKECFEMEAVRDQTRGTNDKILRPSSSIGMNVVDLQDAAGPEVR	765

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa06g1810	765	SMART	serkin_6	484	726	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa06g1810	765	ProSiteProfiles	Leucine-rich repeat profile.	464	486	IPR001611	GO:0005515
	Bisa06g1810	765	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	530	735	-	-
	Bisa06g1810	765	ProSiteProfiles	Protein kinase domain profile.	426	726	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa06g1810	765	Pfam	Leucine rich repeat	439	475	IPR001611	GO:0005515
	Bisa06g1810	765	Pfam	Protein tyrosine and serine/threonine kinase	499	668	IPR001245	GO:0004672\|GO:0006468
	Bisa06g1810	765	SUPERFAMILY	L domain-like	413	483	-	-
	Bisa06g1810	765	Pfam	Malectin-like domain	59	383	IPR024788	-
	Bisa06g1810	765	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	574	586	IPR008271	GO:0004672\|GO:0006468
	Bisa06g1810	765	Gene3D	Ribonuclease Inhibitor	398	492	IPR032675	-
	Bisa06g1810	765	Gene3D	Transferase(Phosphotransferase) domain 1	530	745	-	-
	Bisa06g1810	765	PANTHER	OS07G0107800 PROTEIN-RELATED	57	493	-	-
	Bisa06g1810	765	SUPERFAMILY	Protein kinase-like (PK-like)	500	726	IPR011009	-
	Bisa06g1810	765	Gene3D	Phosphorylase Kinase; domain 1	493	529	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa06g1810	Bisa-ChrBisa06	59949349	59959627	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa06g1810	499	742	Receptor kinase-like Gene Family	AT2G19230	54.065	6.15e-84	283

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Bisa06g1810		Malectin_like	1.8e-108	CL0202