Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1777 ATGGATGGTCTGAGTTGGGATGCCTCACAAGTTTTGGAGAACACACCCATCTTGTGGAGCAATTTCATAGAGCAACAAGAGCTTGAAGAAGCAGGCTACTCCATGACCAACTCAAATCCAAGCTTTCCTAACCACCATCATCATCTATATTCAAATTGTGAGAAAGTGGTGAGTGACATGGTTCAATCAGAAGCAGAAGCAGAATTGGCAGGTGCTATCAATTCAAAGACAAATCTGTCACAGTTTGAAGGTGGGACCAGTTGGGGAGGTGGACCTGTCAGTTTGAAAAACCCATCTGGTAATTTTGAGCCTCCAGATTTCACCATGGCCCACCAGAAACAACAACTTGTCTATAATGGCTCACAGAATGGGACCTGCTCTGTTGAGTCACTGGACTGCTTGTTCTCAGCTGCAAGTAGCAACACAGACACATCTGTGGAAGATGATGGAATCTCTGTGATCTTATCTGACTGCAGAAGACCAAACACATGGACCTTCAATGGAGGAAGTGAATCTGAGAGCACCGCTAATGCTTCCAATGTTGACCATGAAACACTATCTCAGAGCTCCTCAGATCTTTATGGAATCAAAATTTCAGAACCCAACAAGACCAGGTCTTCAAAAAGGAGCTTCCATGATGCCTACTTAGATTCAAGTTCTTTCAGCCTCATCAATGAGAATCACAAGAATCCACCAAAACCCAAAAGACCCAGATGGGATTATTCCAAGTTTCCTGCTTCATCAAACATCAACTTCCAGAACCCAAACTCATCATCATCATCTTCCACGGAAGAGCCAGACCCAGATGCCATAGCACAGATGAAGGAGATAATATACAGGGCTGCAACATTCAGGCCTGTGAATTTGGGGATGGAGGTGGTGGAAAAGCCAAAGAGGAAGAATGTGAGGATATCAACAGACCCTCAGACCGTGGCTGCAAGGCAGAGGAGGGAGAGGATCAGCGAGAGGATTAGGGTTCTGCAGAAACTGGTGCCAGGTGGAAGCAAGATGGACACTGCTTCAATGCTTGATGAGGCTGCAAATTATCTCAAGTTTCTAAGGTCACAAGTGAAAGCATTGGAATCTCTTGGAAGCAAGCTTGATGCCATGAATTGTCCTCCAAGCATTGCTTTCTCTTTCAACCCTTCTTTTCCCATGCAAATTAACCCTTTTCCCCATTTGAAACCCTAA 1191 0.4484 MDGLSWDASQVLENTPILWSNFIEQQELEEAGYSMTNSNPSFPNHHHHLYSNCEKVVSDMVQSEAEAELAGAINSKTNLSQFEGGTSWGGGPVSLKNPSGNFEPPDFTMAHQKQQLVYNGSQNGTCSVESLDCLFSAASSNTDTSVEDDGISVILSDCRRPNTWTFNGGSESESTANASNVDHETLSQSSSDLYGIKISEPNKTRSSKRSFHDAYLDSSSFSLINENHKNPPKPKRPRWDYSKFPASSNINFQNPNSSSSSSTEEPDPDAIAQMKEIIYRAATFRPVNLGMEVVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGSKLDAMNCPPSIAFSFNPSFPMQINPFPHLKP 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1777 396 Gene3D - 309 372 IPR036638 GO:0046983
Bisa06g1777 396 Pfam Helix-loop-helix DNA-binding domain 314 353 IPR011598 GO:0046983
Bisa06g1777 396 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 149 382 IPR045843 GO:0003700|GO:0006355
Bisa06g1777 396 Coils Coil 343 363 - -
Bisa06g1777 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Bisa06g1777 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 370 IPR036638 GO:0046983
Bisa06g1777 396 MobiDBLite consensus disorder prediction 244 267 - -
Bisa06g1777 396 MobiDBLite consensus disorder prediction 222 267 - -
Bisa06g1777 396 MobiDBLite consensus disorder prediction 165 186 - -
Bisa06g1777 396 SMART finulus 310 359 IPR011598 GO:0046983
Bisa06g1777 396 MobiDBLite consensus disorder prediction 83 105 - -
Bisa06g1777 396 FunFam BHLH transcription factor 307 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1777 Bisa-ChrBisa06 59343032 59344222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1777 106 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.175 2.51e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa06g1777 HLH 8.3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa10g1692 10 46009548 46017500 Bisa06g1777 06 59343032 59344222 CCT
Bisa06g1777 06 59343032 59344222 Bisa06g1777 06 59343032 59344222 ECH