Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1672 ATGTCAGCTGCGGCCCGAAAGAAAGATGGTAGTATTGAATTTTTTCTTTTTGTAGTGATGGCAGGATTGGCTCCAGAAGGAACACAATTTGATGCTCGTCAATATGATGCTAAGATGAATGAATTGCTTTCCACTGATGGACAAGAATTCTTCACCTCATATGATGAAGTCTATGATACTTTTGAAGCAATGGGATTACAAGAAAATCTTTTAAGAGGCATTTATGCTTATGGTTTTGAGAGGCCTTCAGCAATCCAGCAAAGGGGGATTGTTCCTTTCTGCAAAGGTCTTGATGTGATTCAACAGGCTCAGTCTGGAACTGGTAAAACGGCAACGTTCTGTTCTGGAATTTTACAGCAACTTGATTATGGGTTGGTTCAGTGCCAGGCCTTGGTTTTGGCACCAACAAGGGAGCTTGCTCAGCAGATTGAGAAAGTTATGCGAGCTCTTGGTGATTACATTGGTGTTAAGGTTCATGCTTGTGTAGGTGGGACAAGTGTTCGTGAAGATCAACACATTCTCCAAGCTGGTGTCCATGTTGTTGTTGGCACTCCTGGGCGTGTGTTTGACATGCTACGAAGGCAGTCTCTTCGTCCAGACCACATAAAAATGTTTGTCTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTATGACATCTTCCAGCTACTGCCATCTAGAATTCAGGTTGGGGTGTTCTCTGCTACAATGCCACCAGAAGCGCTTGACATTACAAGGAAGTTTATGAATAAGCCAGTGAGAATCTTGGTAAAGCGTGACGAACTGACCCTTGAGGGTATCAAGCAGTTTTATGTCAACGTTGAGAGAGAAGAGTGGAAGCTGGAAACACTATGTGATCTTTATGAGACACTGGCTATCACCCAAAGTGTCATCTTTGTGAACACCAGGCGCAAGGTCGACTGGCTCACTGACAAGATGCGAAGCAATGATCATACAGTCTCAGCTACCCATGGTGACATGGACCAAAACACCCGTGATATTATCATGCGCGAATTCCGGTCCGGATCTTCTCGAGTTCTCATCACCACTGATCTCTTGGCTCGTGGAATTGACGTGCAGCAAGTCTCTTTGGTTATAAACTATGATCTTCCAACCCAACCTGAAAATTATCTTCACCGTATTGGGAGAAGTGGACGATTTGGAAGAAAAGGTGTTGCTATAAACTTTGTGACCGCAGATGATTCTAGAATGCTGTCTGATATTCAAAAGTTCTATAACGTTACCGTAGAGGAGCTGCCATCAAATGTTGCTGATCTGCTCTGA 1299 0.4388 MSAAARKKDGSIEFFLFVVMAGLAPEGTQFDARQYDAKMNELLSTDGQEFFTSYDEVYDTFEAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYIGVKVHACVGGTSVREDQHILQAGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSRIQVGVFSATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTADDSRMLSDIQKFYNVTVEELPSNVADLL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1672 432 SMART helicmild6 312 393 IPR001650 -
Bisa06g1672 432 FunFam Eukaryotic initiation factor 4A-II 47 266 - -
Bisa06g1672 432 CDD SF2_C_DEAD 272 402 - -
Bisa06g1672 432 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 59 87 IPR014014 GO:0003724
Bisa06g1672 432 CDD DEADc_EIF4A 63 261 - -
Bisa06g1672 432 Gene3D - 268 432 IPR027417 -
Bisa06g1672 432 FunFam Eukaryotic initiation factor 4A-III 267 432 - -
Bisa06g1672 432 Pfam DEAD/DEAH box helicase 84 245 IPR011545 GO:0003676|GO:0005524
Bisa06g1672 432 Pfam Helicase conserved C-terminal domain 285 393 IPR001650 -
Bisa06g1672 432 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 90 260 IPR014001 -
Bisa06g1672 432 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 56 416 - -
Bisa06g1672 432 SMART ultradead3 78 275 IPR014001 -
Bisa06g1672 432 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 271 432 IPR001650 -
Bisa06g1672 432 Gene3D - 49 267 IPR027417 -
Bisa06g1672 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 413 IPR027417 -
Bisa06g1672 432 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 206 214 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1672 Bisa-ChrBisa06 56303380 56308609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1672 20 432 Eukaryotic Initiation Factors Gene Family AT1G72730 87.681 0.0 764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa10g1594 10 43763862 43767466 Bisa06g1672 06 56303380 56308609 CCT
Bisa06g1672 06 56303380 56308609 Bisa06g1672 06 56303380 56308609 ECH