Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1670 ATGGGGAATCAGAAGCAGAAGTGGACTGCGGAGGAAGAACAAGCCTTGCTCGCCGGAATTGCGAAGCATGGCCACGGCAAGTGGAAGAACATTCTCAAAGATCCCGAATTCGCACCTTTCCTCACTAACCGTTCCAATATCGACCTTAAGGACAAATGGCGAAATTTAAGTGTTAGTAATGCCGCTCCAGGCTCTAAAGAAAAAGTGAGGAATGCCAAGATGAAAGCTGTGGTTCCTGCTGCAATTGCCAGCACACCAAATGCTTCTCCTTCTCCTCCACTTCGTCAATGTGCAGCTTCTGATGCTGTTATGGATGATGCTTCTCAAAATGCACAGGATGTGAAACACTCTCCCCGGTATAATGCAATGGTCTTTGAAGCTCTATCAACAATAAAAGATTCCAATGGATCTGACATAAATGCCATTGTTAGTTTCATTGAGCAAAAGCACAAGGTTCCTCAAAATTTCAGGCGGGCATTAAGTACGAGGTTGAGGAGGCTGGTTGCTCAAGGGAAGCTTGAAAAGGTACAAAACTGTTACAGGATAAAAAAGGAGTCACCTTTGGGGACAAAATCACCTACACCAAAACAGAAGGACGTCTGGCCACGTCAATCACCAGACTCTGGTTTTATGGCGTCTCATGAGACTGTAATGAATGCTGCTGGGTCGGCAGCATATAGAGTTGCTGAAGCAGAGAACAAATCATTTTTGGCTGCTGAGGCAGTGAAGGAGGCAGAGAGATACTTAAAGTTGGCTGATGAAACTGATTCAATATTACAGCTAGCGAAAGATATTTATAAACAATGTTCACGGGGTGAAATTATCCTCTTGGCTTAG 837 0.4444 MGNQKQKWTAEEEQALLAGIAKHGHGKWKNILKDPEFAPFLTNRSNIDLKDKWRNLSVSNAAPGSKEKVRNAKMKAVVPAAIASTPNASPSPPLRQCAASDAVMDDASQNAQDVKHSPRYNAMVFEALSTIKDSNGSDINAIVSFIEQKHKVPQNFRRALSTRLRRLVAQGKLEKVQNCYRIKKESPLGTKSPTPKQKDVWPRQSPDSGFMASHETVMNAAGSAAYRVAEAENKSFLAAEAVKEAERYLKLADETDSILQLAKDIYKQCSRGEIILLA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1670 278 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa06g1670 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa06g1670 278 PANTHER SINGLE MYB HISTONE 4 1 277 IPR044597 GO:0003691
Bisa06g1670 278 FunFam Telomere repeat-binding factor 1 2 58 - -
Bisa06g1670 278 Pfam linker histone H1 and H5 family 118 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa06g1670 278 SUPERFAMILY "Winged helix" DNA-binding domain 116 196 IPR036390 -
Bisa06g1670 278 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Bisa06g1670 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Bisa06g1670 278 SMART sant 4 59 IPR001005 -
Bisa06g1670 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Bisa06g1670 278 CDD H15 118 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa06g1670 278 Gene3D - 112 199 IPR036388 -
Bisa06g1670 278 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bisa06g1670 278 MobiDBLite consensus disorder prediction 184 206 - -
Bisa06g1670 278 CDD SANT_TRF 6 56 - -
Bisa06g1670 278 Gene3D - 2 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1670 Bisa-ChrBisa06 56292950 56297726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1670 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 48.966 3.79e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bisa06g1670 Linker_histone 6.6e-12 CL0123