Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1623 ATGGACGCGCGAGCACAGTATAATCCTCGCACTGTCGAAGAGGTTTTTAGAGATTTCAAGGGCCGACGAGCTGGGCTGATTAAAGCCCTCACAACGGATGTTGAAGAATTCTACAACCAATGTGATCCAGAGAAGGAAAATTTGTGCTTGTATGGATTTCCTAGTGAACAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTTCTGGGCATTAACTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTGTCTTTAGTTGCTGTTCATAGTGATGCGTGGTTACTTGCCATTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGACAAAACTGACAGGAAACGACTCTTCAACATGATCAATGATCTGCCAACAATTTTTGAAGTTGTTACTGGTGCAGCAAAGAAAGAAGTTAAGGAGAAGTCTTCAGTTTCAAATCACAGTGGCAGCAAATCTAAGTCCAGCTCTAAAGTGCGAGCTCCAGAAACTCAGAGCAGACAGTTGAAGGCGTTGCAATCAAAAGATGAGGACGAAGTAGTGGATGATCAAGATGAAGAAGATGAACATGGGGATACCCTGTGTGGGGCATGCGGCGAGAATTATGGTACTGATGAATTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGCAAATGTGTTAAGATTACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGGTTGGTCAAAAGTCCTGGTTGTGCAGATCTTCAGGGATATCCAGATAAGCCATGTAGAGTAAAAACTCTCTCAGAAGAAGAAGAAAAGGGCATTTGCATGGTCCGCTCAGTGGCACGTCTTACAGTGACACCTCTTATCTTATGTGCTCGTTTTGTTTGGCGTTACTTGGCCGATCAAAGTCGAGTCTTGATGCTCTTGGATGGAGATGAGAGCTTCGAGGGTGTGGAATTCTACATTTAG 999 0.4484 MDARAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGAAKKEVKEKSSVSNHSGSKSKSSSKVRAPETQSRQLKALQSKDEDEVVDDQDEEDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARLVKSPGCADLQGYPDKPCRVKTLSEEEEKGICMVRSVARLTVTPLILCARFVWRYLADQSRVLMLLDGDESFEGVEFYI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1623 332 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Bisa06g1623 332 PANTHER CPG BINDING PROTEIN 8 253 IPR045104 GO:0006355|GO:0042393
Bisa06g1623 332 SMART PHD_3 200 248 IPR001965 -
Bisa06g1623 332 MobiDBLite consensus disorder prediction 154 175 - -
Bisa06g1623 332 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Bisa06g1623 332 FunFam PHD finger alfin-like protein 193 249 - -
Bisa06g1623 332 MobiDBLite consensus disorder prediction 145 196 - -
Bisa06g1623 332 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Bisa06g1623 332 Pfam PHD-finger 201 250 IPR019787 -
Bisa06g1623 332 CDD PHD_AL_plant 200 250 IPR044104 -
Bisa06g1623 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
Bisa06g1623 332 SUPERFAMILY FYVE/PHD zinc finger 189 253 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1623 Bisa-ChrBisa06 54823803 54829971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1623 5 253 Alfin-like Transcription Factor Family AT3G42790 74.297 4.37e-125 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Bisa06g1623 Alfin 3.6e-69 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa10g1580 10 43578541 43582722 Bisa06g1623 06 54823803 54829971 CCT
Bisa06g1623 06 54823803 54829971 Bisa10g1580 10 43578541 43582722 ECH
Bisa06g1623 06 54823803 54829971 Bisa06g1623 06 54823803 54829971 ECH