Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1622 ATGGGATTTCTTACACAACAACGTCATAATATAAAGCCTTTGACTGATCAATCTTATCCTATAGTTGGTTCCACAAAATCAGGTCAAATTTCTATCCAGAATAGCAACTCTTCTGCTCATTCAACATGTAACAGAACTGATGGCAAGCCCGTGGGAGATCTAGACAGGTCATTAGTCGGGAGACAGGATTTTGCCTTCCCTTCTCCACAACTGGATCATAGCCAACCAATTGCTCACATTGCTTTCCATAATGCTGAATCATACTTTGGTGGTCTGTTAAATGCTGCATATGGATCAAATTCTAAGATTCATCATGCTCAACTAATGGGAATGGCTCCTCTTCGGATTCCTCTTCCACTTGACCTTACAGAAGAACCCATATTTGTGAATGCAAAGCAGTATCATGCTATTCTGAGGCGAAGACAGTATCGCGCTAAACTTGAAGCACAGAACAAGCTCAACAACAAAACCCGGAAACCATATCTTCACGAGTCCCGGCATCTACATGCATTAAAGAGGGCCCGAGGTTCCGGTGGACGCTTCCTCAACACCAAAAGTCTCCAAGAACCGAAGCTCGCTTCAGCAAGCCAATGCCTAGCTGTTTCTGGCCATGCTCGGTTGCATCAACCGAAAGCGTTTCAGGTAGAAAACTGCAGAGATGGTGCTTCCGCCACCACCGGTTCTGATGTCACAAGTGCATCTAACAGCGACGACATCTTCCAGCAGCAACAGGAGTCTGATTTCAGGTTCTGTGGAGGATATCCTTCTCACACTGGAATCAATATGCAGGGTTTCTCAGGTGATGTGTGTGGTGACGAGAATCATCATCGTCTTTCCGTCTTCATGTGA 849 0.4535 MGFLTQQRHNIKPLTDQSYPIVGSTKSGQISIQNSNSSAHSTCNRTDGKPVGDLDRSLVGRQDFAFPSPQLDHSQPIAHIAFHNAESYFGGLLNAAYGSNSKIHHAQLMGMAPLRIPLPLDLTEEPIFVNAKQYHAILRRRQYRAKLEAQNKLNNKTRKPYLHESRHLHALKRARGSGGRFLNTKSLQEPKLASASQCLAVSGHARLHQPKAFQVENCRDGASATTGSDVTSASNSDDIFQQQQESDFRFCGGYPSHTGINMQGFSGDVCGDENHHRLSVFM 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1622 282 Gene3D - 123 186 - -
Bisa06g1622 282 PRINTS CCAAT-binding transcription factor subunit B signature 158 181 IPR001289 GO:0003700|GO:0006355
Bisa06g1622 282 PRINTS CCAAT-binding transcription factor subunit B signature 126 148 IPR001289 GO:0003700|GO:0006355
Bisa06g1622 282 SMART cbf3 122 184 IPR001289 GO:0003700|GO:0006355
Bisa06g1622 282 MobiDBLite consensus disorder prediction 33 52 - -
Bisa06g1622 282 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 249 IPR001289 GO:0003700|GO:0006355
Bisa06g1622 282 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 125 181 IPR001289 GO:0003700|GO:0006355
Bisa06g1622 282 ProSitePatterns NF-YA/HAP2 subunit signature. 128 148 IPR018362 GO:0003677|GO:0016602
Bisa06g1622 282 ProSiteProfiles NF-YA/HAP2 family profile. 123 184 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1622 Bisa-ChrBisa06 54818073 54820911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1622 73 280 CCAAT-HAP2 Transcription Factor Family AT1G17590 50.463 2.69e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bisa06g1622 CBFB_NFYA 1.8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa10g1578 10 43500224 43514403 Bisa06g1622 06 54818073 54820911 CCT
Bisa06g1622 06 54818073 54820911 Bisa06g1622 06 54818073 54820911 ECH