Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1612 ATGGATAACTTCGTGGTTTCCAAGAGCAAATCTCAGAGAGGAGGCTCAGTTTTCTTCAGTTCACAGAAGATCACCACCAACATGGCGACCCAAATGAGCAAAAAGCGAAAGTTTGTAGCAGATGGAGTTTTCTTTGCGGAGTTGAATGAAGTTTTGACCAGGGAGCTGGCAGAAGATGGGTATTCTGGTGTTGAAGTTAGAGTTACGCCCATGCGGACTGAGATCATCATTAGAGCGACTCGCACTCAGAACGTCCTTGGCGAGAAGGGAAGAAGAATTAGGGAGCTGACTTCTATTGTTCAGAAGCGTTTCAAGTTCCCTGAGAACAGTGTTGAGCTTTATGCTGAGAAAGTCAACAACAGAGGGCTCTGTGCTATTGCTCAGGCGGAGTCTCTGCGTTACAAGCTTCTTGGAGGACTTGCTGTCCGAAGGGCTTGCTATGGTGTCTTGAGGTTTGTCATGGAAAGTGGAGCTAAAGGTTGCGAGGTTATTGTTAGCGGCAAGCTCAGGGCTCAGCGTGCCAAATCTATGAAGTTCAAGGATGGCTACATGATTTCATCCGGTCAGCCTGTCAAGGAATATATCGACTCGGCTGTGAGGCATGTGCTTCTTAGACAGGGTGTTCTTGGTATCAAGGTGAAAATTATGCTTGATTGGGATCCTAAGGGTAAACAAGGCCCAACTAAGCCCATTCCAGATCTCGTTACCATCCATCCGCCGAAGGAGGAAGAGGATTACACTGTCAGACCCTTGCAACAGCCGGCCGCCCCTACCAATATAGAGATTGCAGCGGTGTAG 798 0.4812 MDNFVVSKSKSQRGGSVFFSSQKITTNMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPIPDLVTIHPPKEEEDYTVRPLQQPAAPTNIEIAAV 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1612 265 ProSiteProfiles Type-2 KH domain profile. 48 119 IPR004044 GO:0003723
Bisa06g1612 265 NCBIfam 30S ribosomal protein S3 35 218 IPR005703 GO:0003735|GO:0006412|GO:0015935
Bisa06g1612 265 ProSitePatterns Ribosomal protein S3 signature. 174 210 IPR018280 -
Bisa06g1612 265 CDD KH-II_40S_S3 32 122 - -
Bisa06g1612 265 FunFam 40S ribosomal protein S3 28 119 - -
Bisa06g1612 265 Gene3D - 120 246 IPR036419 -
Bisa06g1612 265 Gene3D - 24 118 IPR015946 -
Bisa06g1612 265 Pfam Ribosomal protein S3, C-terminal domain 133 215 IPR001351 GO:0003735|GO:0006412
Bisa06g1612 265 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 37 126 IPR009019 GO:0003723
Bisa06g1612 265 SUPERFAMILY Ribosomal protein S3 C-terminal domain 120 218 IPR036419 -
Bisa06g1612 265 FunFam 40S ribosomal protein S3 120 256 - -
Bisa06g1612 265 Pfam KH domain 47 120 IPR004044 GO:0003723
Bisa06g1612 265 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 33 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1612 Bisa-ChrBisa06 54560266 54562941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1612 28 252 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 89.333 3.48e-150 417