Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1561 ATGTCGACTTTTTCCGATACGGCGGCGGCTGGCCGGAGGTCCGGCAAGGCGCCGGAGAGGTCCAGTTTCAACCATACCTGTAATCTCATAAGCCAATACTTGAAGGAGAAGCGAAGTTCTGGAGCATTAAGCCTTGGAAATATGGCTGCGAAAATAGAACCCAGAGCTACTACGATGGACTTGTTAATGAACCTGGAAAAATCTGATGATGCTTCGAGACAAAGCGCTTCAGCTATGGATTTTCTGAACCCTCAGTTTGTGGAAAACCAGTATAATCTCAGGTCTCCAGCCAGAGCAGAGCCCAAGGCTCCACAGATGGCAATATTTTACGCCGGAAAAATATTGGTGTTTGATGCTTTTCTGCCGGAGAAGGCGACAGAGATCATGGAGCTAGCCACCAAGTTAAGCTCTGATAATTCCCTCGTTAACGGAACACACCCAAGTGCTCCTCTGCCTCGAACAAACACAGCCCAACAAGCTTCTCGATCCGTCTCACAAGCTTTTGGTTCAGATATGAGGTACCCAAGGAGAGCTTCACTTTTGAAATTTCTGGAGAAAAGAAAAGAAAGGGTGATGGCAAGAGGACCATATCATATGAACCCCAAGCATGAGGGAGTCAGTTCTGGAGGCCATCCTGAAGATCAACCTTGCAAACCCTTTGACCTTAATTTATAGCCTCTCTCCCTTCACCTCTCTCATCTGCCTCCAGGGCCACACTTGGGGACCCGCCCTAACCCTAATCGGGCTATCGATTTTCCCGGAAAAATCACCCTGAAAATGCAGAATCCCAGGTTGAAGCAGCAGCAGCAGCAGCAGCAGCAAGCTCTGATGCAACAAGCTCTTATGCAGCAACAGTCTCTCTATCACCCTGGCCTCCTAGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATACGAGTACTTGCCGCAGTGTGTATGTGGGGAATATCCATACACAGGTCACCGAGCCACTTCTGCAAGAGGTTTTTTCAAGTACTGGCCTGGTTGAAGGTTGTAAGCTTATTAGAAAGGAGAAGTCATCCTATGGATTTATTCACTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGACAGCCTATCAAAGTCAACTGGGCATACGCAAGTGGTCAGAGAGAGGATACCTCAGCTCATTACAACGTATTTGTTGGTGATCTCAGTCCTGAGGTTACTGATGCCACCTTGTTCGCATGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGACGTTCAAGGGGGTTTGGGTTTGTTTCATTCCGTAGTCAACAGGATGCTCAAGGTGCCATAAATGATTTGACTGGTAAGTGGCTTGGTAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGTTCTAGTGATGACAAGCCAAATTCAGACACCAAAAGTGTGGTCGAACTAACAAATGGCTCATCAGAAGATGGTAAGGAGACAGCTAACAGTGATGCTCCAGAGAACAATCCTCATTATACTACTGTCTATGTGGGCAATCTTGCTCCAGAGGTAACTCAACTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCTGGAGTGATAGAGGAGGTCCGAGTCCAGCGTGACAAGGGGTTTGGCTTTGTGAGGTATAATAATCATGCTGAAGCAGCATTGGCTATTCAGATGGGGAATACTCAGTCTATTCTATGCGGAAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCTCCTCCCGCTGCAGCCCCTCTGCCTGGCCTTTCTGCGTCTGATCTTTTGGCCTATGAGCGTCAGCTAGCAATGAGCAAGATGGGTGGTGTCCATGCCCTGATGCATCCCCAAGGACAGCATCCTCTTAAACAGGCAGCAATTGGAGGGAGCCAAGCAATATATGATGGCGGGTTTCAGAATGTTGCTGCGGCACAACAGATGATGTACTACCAGTAA 2043 0.4797 MSTFSDTAAAGRRSGKAPERSSFNHTCNLISQYLKEKRSSGALSLGNMAAKIEPRATTMDLLMNLEKSDDASRQSASAMDFLNPQFVENQYNLRSPARAEPKAPQMAIFYAGKILVFDAFLPEKATEIMELATKLSSDNSLVNGTHPSAPLPRTNTAQQASRSVSQAFGSDMRYPRRASLLKFLEKRKERVMARGPYHMNPKHEGVSSGGHPEDQPCKPFDLNLXPLSLHLSHLPPGPHLGTRPNPNRAIDFPGKITLKMQNPRLKQQQQQQQQALMQQALMQQQSLYHPGLLAPPQIEPIPSGNLPPGFDTSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSAHYNVFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQGAINDLTGKWLGSRQIRCNWATKGAGSSDDKPNSDTKSVVELTNGSSEDGKETANSDAPENNPHYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYNNHAEAALAIQMGNTQSILCGKQIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSASDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1561 680 CDD RRM2_PUB1 400 479 - -
Bisa06g1561 680 SMART tify_2 99 134 IPR010399 -
Bisa06g1561 680 MobiDBLite consensus disorder prediction 233 252 - -
Bisa06g1561 680 CDD RRM1_PUB1 318 388 - -
Bisa06g1561 680 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 293 600 - -
Bisa06g1561 680 SMART rrm2_1 402 475 IPR003954 GO:0003676
Bisa06g1561 680 MobiDBLite consensus disorder prediction 478 522 - -
Bisa06g1561 680 MobiDBLite consensus disorder prediction 197 221 - -
Bisa06g1561 680 Gene3D - 499 601 IPR012677 -
Bisa06g1561 680 FunFam oligouridylate-binding protein 1B-like isoform X2 260 398 - -
Bisa06g1561 680 SUPERFAMILY RNA-binding domain, RBD 315 480 IPR035979 GO:0003676
Bisa06g1561 680 ProSiteProfiles Tify domain profile. 99 134 IPR010399 -
Bisa06g1561 680 FunFam Oligouridylate-binding protein 1C 499 601 - -
Bisa06g1561 680 Gene3D - 396 491 IPR012677 -
Bisa06g1561 680 Gene3D - 256 395 IPR012677 -
Bisa06g1561 680 SUPERFAMILY RNA-binding domain, RBD 513 604 IPR035979 GO:0003676
Bisa06g1561 680 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 390 IPR000504 GO:0003723
Bisa06g1561 680 MobiDBLite consensus disorder prediction 1 21 - -
Bisa06g1561 680 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 401 479 IPR000504 GO:0003723
Bisa06g1561 680 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 522 597 IPR000504 GO:0003723
Bisa06g1561 680 SMART rrm1_1 523 593 IPR000504 GO:0003723
Bisa06g1561 680 SMART rrm1_1 317 386 IPR000504 GO:0003723
Bisa06g1561 680 SMART rrm1_1 402 475 IPR000504 GO:0003723
Bisa06g1561 680 MobiDBLite consensus disorder prediction 142 162 - -
Bisa06g1561 680 Pfam Jas motif 176 197 IPR018467 -
Bisa06g1561 680 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 403 473 IPR000504 GO:0003723
Bisa06g1561 680 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 524 590 IPR000504 GO:0003723
Bisa06g1561 680 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 384 IPR000504 GO:0003723
Bisa06g1561 680 Pfam tify domain 101 132 IPR010399 -
Bisa06g1561 680 FunFam oligouridylate-binding protein 1-like isoform X2 399 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1561 Bisa-ChrBisa06 53216206 53228120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1561 308 592 Eukaryotic Initiation Factors Gene Family AT4G34110 28.716 6.19e-21 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Bisa06g1561 RRM_1 2.4e-16 CL0221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa06g1561 06 53216206 53228120 Bisa06g1561 06 53216206 53228120 ECH