Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1537 ATGCCTTCTTCTTCTTCTTCCTCCTCAAAGCCTGCGAAAAGGCCAAGCGTAGGGAGGCAGAAGATCGAAATCAGGAGAGTCGAACAGTCCAGCAAGCGTCACGTTACCTTCTCCAAACGCAAACTCGGTCTCTTCCGCAAAGCTGCCGAGCTCTCCCTCCTCTGCGACTCCGAAATCGCTGTCATCGTCTTCTCCCAAAACGGCAAGATCTACTCCTCCGGCCACCCCGAACCGGAGTCCGTCATTCGCCGCTATCTCTGCGGTTCCTCCTCAAACCCGCCGCCGCTCCGCGATCGGGAAATCGAATCGGCGATGTCGTCGCTGAGGCAGGAATACGAGGAGTCGAAGAAGCAATTGGAAGAGGAGAAGAAGCGCCTCGACGCGATTTCGGAGATTCGCGGATCGGGTCGTGGACACAGGTTTTGGTGGAACAATCCGATTGCAGATATGGATTTGGAGAATGTTGAGCAGTTCAAGGTGTGCGCTGAACAGCTGAGGCAGAATTTGGTTGCCACGGCGGAGAAGAAGAGATTGATCGAGTCGTCGCCGCCGCCGATGATGACAGCGACGGAGTTTCCGTATGTTCCTATGTTGAACGGCGATTTGGTTGAGAATCTTGAGACTGATCAGGCATGGGATTATTCTTGGAATGGTTGTACCAGTGGCAGTTCATTCTTGATTCCTGATAGTCTTGCGGATATGGATTTGGAGAATGTTGAGCAGTTCAAGGTGTGCGCTGAACAGCTGAGGCAGAATTTGGTTGCCACGGCGGAGAAGAAGAGATTGATCGAGTCGTCGCCGCCGCCGATGATGACAGCAACGGAGTTTCCGTATGTTCCTATGTTGAACGGCGATTTGGTTGAGAATCTTGAGACTGATCAGGCATGGGATTATTCTTGGAATGGTTGTACCAGTGGCAGTTCATTCTTGATTCCTGATAGTCTTGCGGATATGGATTTGGAGAATGTTGAGCAGTTCAAGGTGTGCGCTGAACAGCTGAGGCAGAATTTGGTTGCCACGGCGGAGAAGAAGAGATTGATCGAGTCGTCGCCGCCGCCGATGATGACAGCAACGGAGTTTCCGTATGTTCCTATGTTGAACGGCGATTTGGTTGAGAATCTTGAGACTGATCAGACATGGGATTATTCTTGGAATGGTTGTACCAGTGGCAGTTCATTCTTGATTCCTGATAGTCTTGCGGATATGGATTTGGAGAATGTTGAGCAGTTCAATGTGTGCGCTGAACAGCTGAGGCAGAATTTGGTTGCAGCAGCGGAAAAGAAGAGGTTGAGCCAGTCGCCGCCGCCGCCGATCATGACAGCGACGGAGTTTCCGTATGTTCCTATGTTGAACGGCGATTTGGTTGAGAATCTTGAGACTGATCAGGCATGGGATTATTCTTGGAATGGTTATACCAGTGGCAGTTCATTCTTGATTCCTGATAGTCCTGGCCATTACTGA 1461 0.5079 MPSSSSSSSKPAKRPSVGRQKIEIRRVEQSSKRHVTFSKRKLGLFRKAAELSLLCDSEIAVIVFSQNGKIYSSGHPEPESVIRRYLCGSSSNPPPLRDREIESAMSSLRQEYEESKKQLEEEKKRLDAISEIRGSGRGHRFWWNNPIADMDLENVEQFKVCAEQLRQNLVATAEKKRLIESSPPPMMTATEFPYVPMLNGDLVENLETDQAWDYSWNGCTSGSSFLIPDSLADMDLENVEQFKVCAEQLRQNLVATAEKKRLIESSPPPMMTATEFPYVPMLNGDLVENLETDQAWDYSWNGCTSGSSFLIPDSLADMDLENVEQFKVCAEQLRQNLVATAEKKRLIESSPPPMMTATEFPYVPMLNGDLVENLETDQTWDYSWNGCTSGSSFLIPDSLADMDLENVEQFNVCAEQLRQNLVAAAEKKRLSQSPPPPIMTATEFPYVPMLNGDLVENLETDQAWDYSWNGYTSGSSFLIPDSPGHY 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1537 486 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Bisa06g1537 486 Coils Coil 98 132 - -
Bisa06g1537 486 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Bisa06g1537 486 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 72 IPR002100 GO:0003677|GO:0046983
Bisa06g1537 486 PANTHER MADS BOX PROTEIN 19 169 - -
Bisa06g1537 486 SUPERFAMILY SRF-like 17 87 IPR036879 GO:0003677|GO:0046983
Bisa06g1537 486 CDD MADS_MEF2_like 18 91 IPR033896 GO:0000977|GO:0045944
Bisa06g1537 486 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Bisa06g1537 486 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Bisa06g1537 486 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Bisa06g1537 486 MobiDBLite consensus disorder prediction 1 25 - -
Bisa06g1537 486 Gene3D - 30 131 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1537 Bisa-ChrBisa06 52814884 52816344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1537 14 190 Type I MADS-box Gene Family AT5G60440 36.216 3.09e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa06g1537 SRF-TF 3.1e-21 No_clan