Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1517 ATGATGTTTCATCCTCAAGGAGCTTCGAGACAGACTTGTAGTCTACTTGCTGTCACATGTGGCAAAAGCATTGAACATGAATTTGGGAAGAAACTCCCCCAGAATCAGCTGAAATATCGCTTTCCTGAGTTAACTTCTTCAGGACGTCTGGAGGTTCAAACTCTAAACAATCCAGAAAAAGAACAGTTTAGGAAAGTTCTCGAGTCTTACCAACCAAATTTTGTATACTTACAAGGAGAACAGCTTGCGAATGGTGAAGTTGGTTCTTTGGTCTGGCAAGGTGAAGAATTGGCCACTCCTGAAGCTATAGTAGAGCTCTTTGGTCCTACATTGCCCACAGCTGTTTACTTGGAAATTCCAAATGGAGAAACTTTGGCTGAGGCTCTTCATCTTAAGGGAGTTTCATATGTGATTTACTGGGAGAATACTTTTTCTTGTTATGCTGCTTGCCATTTTCGTCAAGCATTTCTTTCGGTGGTGCAGAGTTCATCTACGCATACATGGGATGCCTTTCACCTTGCACGTGCTTCTTTTGAGTTTTACTGTGTTCAGAATAATCAAGTCCTTCCTTCTGGGAGCCATGATGATAGTAGCAATATAGGGCCACATCTCCTGGGCAACTGTCTGAAAATCAATGTTGACCCTCCTGAGGTGTGTGAAGATGAAGAAGAAGGTTCCTCTGGCAGTCTTCCTGCTATAAAGATACATGATGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCACCTTCCACTGTTGATGCATCAATGTTGAGATCTTTGGAGGATGGACTCAGAGCGCTATTGACCATTGAAGTACGTGGGAGCAAACTCCATGGCAAGTTTAGTGCTCCCCCACCACCTCTTCAGGCAGCCACTTTTTCTCGTGGAGTTGTGACTATGCGATGCGACATATCAACTTGTAGTTCAGCCCATATCTCACTTCTGGTCTCCGGTAGTGCACAAACTTGCTTCAATGATCAGTTGTTGGAGAATCATATAAAAAATGAGATAATTGAGAAAAGCCAACTAGTTTATGCGCAAATTAATGAGGGAAACAAACAGAATGTCTCTGAACCTCGGAGATCTGCCTCAATTGCTTGTGGAGCAGCAGTATTTGAAGTTTGTATGAAGCTTCCTCTATGGGCCTTGCAGGTTTTAAGACAGCTAGCGCCTGATGTTACTTGTCGAAGTTTAGTTGCACTTGGGATTGCTAGCATTCAGGGGTTGCCTATTGCTTCATTTGAGAAAGACGATGCTGATCGCCTGCTTTTCTTCTACCAGAGATTTGAGAAGGATAGTTGTGCAAACAATATAATTTTCGGCAGTTCCCCTGCTTGGTTGAAACCACCCCCTCCTACTAGAAAAAGGTCTGAACCAAGCCAAGAGGCAAGCCCTGGCCATCATGATGGTGTTCGAAAAGTAGATGAAGAGGAAAAAGAGACAAAAATGGCAAATGGATTTAGCACACCCTTAACTCCAGCTAGGCAGAGATTAAAAGTATCGGCAATGAGGCCCATTCCTCATGTCCGTCGCCATAGAATGACACCCTTTTCGGGACCTTCTGAGACAGAAGGTTATGATGGTGCCCAAGTCGAGGTTAGTTTGCCACCTGTTGTCCCCATAAAGCGCAGTGCTGCTGGATCTAGTTCTGCAACACAGAGAAGATCATTTTCAAGCTCAGCTCAGTCTAAGCAGGTTATTTCCTTGAATCCCCTGCCCTTGAAAAAACATGGTTGTGGCAGAGGTTCAATACAAATTTGCTCTGAGGAGGAATTTCTGAAAGATGTCATGGAGTTTCTAATTCTTCGGGGACATAGTCGACTAATTCCTCAAGGAGGGCTTACTGAGTTCCCTGATGCCATACTCAATGGGAAACGTCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGTGTCGGAAATACACTCAAAAGGCATTATGAAACTTACCTTCTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGCGCAGCTGGTGATTGGGTGAATTGTGGCATATGCGGAGAGTGGGCCCATTTTGGCTGTGACAGACGGCAAGGTCTCGGTGCATTTAAGGATTATGCAAAAACAGATGGGCTAGAATATATTTGCCCTCATTGTAGCGTTACAAATTTCAAGAAGAAACCCTCAGGTGCTGCCAATGGGTATTCTCAGGGGTCAGTGGCATCAAGACCCCTTTAA 2325 0.44 MMFHPQGASRQTCSLLAVTCGKSIEHEFGKKLPQNQLKYRFPELTSSGRLEVQTLNNPEKEQFRKVLESYQPNFVYLQGEQLANGEVGSLVWQGEELATPEAIVELFGPTLPTAVYLEIPNGETLAEALHLKGVSYVIYWENTFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFEFYCVQNNQVLPSGSHDDSSNIGPHLLGNCLKINVDPPEVCEDEEEGSSGSLPAIKIHDDEVNLRFLICGAPSTVDASMLRSLEDGLRALLTIEVRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKSQLVYAQINEGNKQNVSEPRRSASIACGAAVFEVCMKLPLWALQVLRQLAPDVTCRSLVALGIASIQGLPIASFEKDDADRLLFFYQRFEKDSCANNIIFGSSPAWLKPPPPTRKRSEPSQEASPGHHDGVRKVDEEEKETKMANGFSTPLTPARQRLKVSAMRPIPHVRRHRMTPFSGPSETEGYDGAQVEVSLPPVVPIKRSAAGSSSATQRRSFSSSAQSKQVISLNPLPLKKHGCGRGSIQICSEEEFLKDVMEFLILRGHSRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKPSGAANGYSQGSVASRPL 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1517 774 CDD PHD_ARID4_like 697 748 - -
Bisa06g1517 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 691 754 IPR013083 -
Bisa06g1517 774 CDD ARID 589 687 - -
Bisa06g1517 774 SMART ARID_2 584 687 - -
Bisa06g1517 774 MobiDBLite consensus disorder prediction 545 565 - -
Bisa06g1517 774 Gene3D - 585 690 IPR036431 GO:0003677
Bisa06g1517 774 SUPERFAMILY ARID-like 588 702 IPR036431 GO:0003677
Bisa06g1517 774 SMART bright_3 588 692 IPR001606 GO:0003677
Bisa06g1517 774 MobiDBLite consensus disorder prediction 546 565 - -
Bisa06g1517 774 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 771 IPR042293 -
Bisa06g1517 774 MobiDBLite consensus disorder prediction 446 494 - -
Bisa06g1517 774 MobiDBLite consensus disorder prediction 461 484 - -
Bisa06g1517 774 Pfam ARID/BRIGHT DNA binding domain 590 687 IPR001606 GO:0003677
Bisa06g1517 774 SUPERFAMILY FYVE/PHD zinc finger 687 754 IPR011011 -
Bisa06g1517 774 ProSiteProfiles ARID domain profile. 587 691 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1517 Bisa-ChrBisa06 52443012 52451606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1517 2 763 ARID Transcription Factor Family AT3G43240 62.272 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bisa06g1517 ARID 2.1e-14 CL0123