Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1440 ATGGCAGCTAAGGCTCTCTGCTTCACGGCACCTTCTTTCTCACCACTGAGAATCAAACCCCAATTCGCAGCTTCAGCGAAACCCTTCTTTTCGTGCTCGGTGTCTTTGGCTTCTTCGGCTTATTCGTTATCCCTCGGCGCTATCTTCTCTTCGCAGCCCAGCACTTCGGACCCTTCATCATCTTCTTCTTCATTGAAGGGCCAAAGCAGGAAAGCCAGGGTTTGCACGGCTTTTGGGGTTGTGGATGAAGAAGCAGTAATTGCAGAAGAGATTAACGGAGAGAAATATGTGGAATCGGAAAACGATGACGTTTCCGGCGAGGAAGAAACCAAGAAAGTTGGAAGACCTTGTGAAGTGTATGTGTGTAACATTCCAAGAAGCTGCGACTCAACACAGCTTCTCGATATGTTCAAGCCTTACGGAAATGTTCTAGCAGCAGAGATTTGCCGGCATGCTGAAACTGGTGAAAGTAGAGGATGTGGATATGTCACAATGGGATCTATAAACTCAGCAAAAAAAGCAGTTGCTGCGTTGGATAAATCAGACATTGATGGGCGCGAAATGCGGGTTAGATTTTCAGTTCAGATGAATCCTGGAAGGAGGAATCCTGAGACAATGAGCTCGTCGCCGCAGAAAGTTATATACTATGAAACTCTTCATAAGTTGTACGTTGGCAATCTTTCTAGGGCGGTTAAACCTGAGGATTTATGGAATCATTTTAGCAGAATTGGGACAGTGGTTAGTGTAAGAATATTGCATGATCACAAAGAAGGGAGTAACCGTATATATGCATTTCTCTCCTTCCTTACAAAGTTTGAACGTGATGCAGCAATGACTCTTAATGGAACAGAACTTGGTGGCCGTACAATAGTGGTGAGAGAGGGCGTGGAGAGAACTAGGCTTTAA 906 0.4503 MAAKALCFTAPSFSPLRIKPQFAASAKPFFSCSVSLASSAYSLSLGAIFSSQPSTSDPSSSSSSLKGQSRKARVCTAFGVVDEEAVIAEEINGEKYVESENDDVSGEEETKKVGRPCEVYVCNIPRSCDSTQLLDMFKPYGNVLAAEICRHAETGESRGCGYVTMGSINSAKKAVAALDKSDIDGREMRVRFSVQMNPGRRNPETMSSSPQKVIYYETLHKLYVGNLSRAVKPEDLWNHFSRIGTVVSVRILHDHKEGSNRIYAFLSFLTKFERDAAMTLNGTELGGRTIVVREGVERTRL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1440 301 SMART rrm1_1 221 293 IPR000504 GO:0003723
Bisa06g1440 301 SMART rrm1_1 118 191 IPR000504 GO:0003723
Bisa06g1440 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 297 IPR000504 GO:0003723
Bisa06g1440 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 290 IPR000504 GO:0003723
Bisa06g1440 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 189 IPR000504 GO:0003723
Bisa06g1440 301 PANTHER OS02G0815200 PROTEIN 35 293 - -
Bisa06g1440 301 SUPERFAMILY RNA-binding domain, RBD 217 297 IPR035979 GO:0003676
Bisa06g1440 301 SUPERFAMILY RNA-binding domain, RBD 116 206 IPR035979 GO:0003676
Bisa06g1440 301 Gene3D - 52 198 IPR012677 -
Bisa06g1440 301 Gene3D - 199 300 IPR012677 -
Bisa06g1440 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1440 Bisa-ChrBisa06 50584118 50586237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1440 117 292 Eukaryotic Initiation Factors Gene Family AT2G23350 29.379 7.33e-16 75.9