Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1409 ATGGCACACACCCCCAAAAACATTCCCTATCACCTATCCTCAACCTTGAGGGCTTTAAAGTCCCAGCAAGAAGCCACTGCGAATCCCCACATGTTAGATCACATGATGGAGTATTCTCATTCATCAGAAGTTGCAGAAGCAGAAGCCTATAGCAGCACAAACCTACCGGGAGGCTTGAGAAAGAGGAAGAGCAAAAACCAGAGAAGATTCAGTGATGAACAAATCAAATCATTGGAATCTATGTTCGAGACAGAGTCAAGGCTTGAGCCTAGGAAGAAGTTGCAGCTAGCAAGAGAACTTGGGTTGCAGCCAAGGCAGGTGGCTATATGGTTCCAGAACAAGAGGGCTAGATGGAAGTCTAAGCAGATTGAAAGAGACTACAGCATACTTAGAGGCAATTATAGCAGCCTGGCTTCACGTTTCGAAGCTCTGAAGAAGGAGAAGCAGACATTGCTAGTTCAGTTGCAAAAGCTGAATGATCTAATACAGAAACCAAAAGAGCAAGCTCAGTGCTGTACACAAATCAAACCAGCAAACAGCATGGATAGTCAATCAGAAAATGGAGACACCGTTAAGGGAGAACCTGACGTAAAGTTAAGCCCGTCAATGGAAAGATCAGAGCACATACTAGGCGTTCTCTCAGACGAGGATAGCAGCATAAAGGCAGAATACTTTGGCCTTGAAGATGAACCTGCCCTTCTGAATTTTGGTGATCAAGTTGATGATTCCTTGACTTCAGCAGAAGACTGGGGCACTTTAGACTCTGATGGCGTCTTAGCCCAGTCTGGTAGTGGTTACCAGTGGTGGGACTTTTGGTCCTGA 822 0.455 MAHTPKNIPYHLSSTLRALKSQQEATANPHMLDHMMEYSHSSEVAEAEAYSSTNLPGGLRKRKSKNQRRFSDEQIKSLESMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQIERDYSILRGNYSSLASRFEALKKEKQTLLVQLQKLNDLIQKPKEQAQCCTQIKPANSMDSQSENGDTVKGEPDVKLSPSMERSEHILGVLSDEDSSIKAEYFGLEDEPALLNFGDQVDDSLTSAEDWGTLDSDGVLAQSGSGYQWWDFWS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1409 273 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Bisa06g1409 273 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Bisa06g1409 273 Coils Coil 141 161 - -
Bisa06g1409 273 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Bisa06g1409 273 MobiDBLite consensus disorder prediction 178 199 - -
Bisa06g1409 273 Gene3D - 49 124 - -
Bisa06g1409 273 SUPERFAMILY Homeodomain-like 47 122 IPR009057 -
Bisa06g1409 273 CDD homeodomain 65 122 IPR001356 GO:0003677
Bisa06g1409 273 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Bisa06g1409 273 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 189 IPR045224 GO:0003700
Bisa06g1409 273 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Bisa06g1409 273 FunFam Homeobox-leucine zipper protein ATHB-7 49 121 - -
Bisa06g1409 273 MobiDBLite consensus disorder prediction 49 71 - -
Bisa06g1409 273 Pfam Homeobox associated leucine zipper 121 162 IPR003106 GO:0006355|GO:0043565
Bisa06g1409 273 SMART HOX_1 64 125 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1409 Bisa-ChrBisa06 49569693 49571081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1409 69 273 Homeobox Transcription Factor Family AT3G61890 54.502 1.53e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa06g1409 Homeodomain 1.6e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa06g1409 06 49569693 49571081 Bisa06g1409 06 49569693 49571081 ECH