Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1377 ATGAAGGTTGAGTTAGGATTAGGAGGTGTGTTGTGGAATGATGAGGAAAAAGCCATGGTTGCATCGGTGCTGGGCGCACGAGCTTTCGATTATTTGATTACGAACCCTGTTTCGAACGAGAATCTGTTAATGGCACTTGGAAGCGACGAAAATTTACAGAACAAGCTCTCGGATCTCGTGGACCGTCCCAACGTATTGAATTTCAGCTGGAACTACGCGATTTTCTGGCAGATATCGCAGTCGAAGAAATCTGGAGATTGGGTATTGGGTTGGGGAGATGGGTGTTGCAGAGAACCCAAGGAAGAAGAAGAAGAAGAAGGCGGAGTCGGAGGGCTTCTTAGTCTAAGATTGGAGAAAGATGAGATGCAACAGAGGATGAGGAAAGGGGTGCTTCAGAAGCTTCACACAACGTTTGGGGGTTCAGATGAGGACAATTATGCCTTTGGATTAGACAGGGTTACTGATACAGAAATGTTCTTTCTGGCTTCCATGTACTTCTCCTTCCCTCATGGCCATGGCGGTCCTGGCAAGTGCCTAGCCTCCGGGAAGCATGTTTGGCTTTCTAATGCACTGAAATCTAACTCTGATTACTGTGTGAGGTCTTTTCTGGCAAAATCAGCTGGAATTCAGACTATTGTTTTGGTCCCTACTGACATGGGGGTGGTAGAGTTGGGTTCTGTGAGGATGGTTGGAGAAAGCTTAGAATTGTTGCAGGCAATAAAATCAGTGTTTTCGGCACAATCATCGTATCCTAGGGTTTCACCACTTTCACCATTACCTGTTATGGCAAATGAGAAGAAAGATGAAGGTGGTATTTTCTGTGGTTTGGCAGTTGGGGATAAGGTACGGGGAATTCCAAAGATTTTTGGTCAGGATTTGAACTTGGGAAACCCTGGTCGTCCCCAGTTTAGGGAGAAACTTGCTGTTAGGAAAATGGAGGAGAGGAATTGGGGAGGCCAAGGCCAACCCAATGGCAATAGCATTAGCTTTCCAAATGCTCCAAATGGTATTCATGGTTCGAGTTGGGCTGCCAACCAAGGTGCAAAACAGCTCAGCCCTGCTGAGATTTATGCTTCGAGATCCTCTGTCTGCAATATACCGGAGGTTGTAAACCGGGTTAGGCAAGATTTTCGGCTTACCAACTACCAACCACAAAGGCAGGTGCAAATGCAAATGCAAATTGATTTCTCGGGAGCAACTTCAGGGCCATCTGTGAGACCTATCAATGCTGAATCAGAGCTTTCTGATGTTGAGACTTCATGCAAAGAAGAGCCGCCAGGTGCATCTGATGAAAGGAGGCCAAGGAAACGGGGCAGAAAGCCTGCCAATGGAAGGGAAGAACCCCTTAATCATGTCGAAGCAGAGAGGCAAAGGCGTGAGAAGTTGAATCAGCGGTTCTATGCGCTACGGGCTGTTGTCCCCAATATATCCAAGATGGACAAGGCCTCTTTGCTGGGAGATGCCATTGCTTATATCAATGAGCTTCAAGCAAAACTCAAGACCATGGAATCTGAGAGAGAGATATCTGGGAGCACTTCAAGGGAAGGGCCAGTATCAGAATCAGAGGCTGACCAGAAAGCAGAAAATCATAACCGAACTCCTGATATCGAGATTCAAGCCTCTCAAGATGAGGTGATTGTAAGGGTGAGCAGCCCTCTCAATGCTCATCCTGTCTCAAGGGTAATCCAAGCATTCAAAGAAGCACAAATTAGTGTCGTTGAGTCAAAAATTGCAGATGCAAATGATACCGTTTCCCATACTTTCATAATCAAGTCTCAAGGATCCGAGCAGCTGACAAAGGAGAAGTTGATTGCAGCATTTTCCCGAGAATCCAACTGCTCACTGCCATCATCACCAGTTGGGTAG 1866 0.4652 MKVELGLGGVLWNDEEKAMVASVLGARAFDYLITNPVSNENLLMALGSDENLQNKLSDLVDRPNVLNFSWNYAIFWQISQSKKSGDWVLGWGDGCCREPKEEEEEEGGVGGLLSLRLEKDEMQQRMRKGVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPHGHGGPGKCLASGKHVWLSNALKSNSDYCVRSFLAKSAGIQTIVLVPTDMGVVELGSVRMVGESLELLQAIKSVFSAQSSYPRVSPLSPLPVMANEKKDEGGIFCGLAVGDKVRGIPKIFGQDLNLGNPGRPQFREKLAVRKMEERNWGGQGQPNGNSISFPNAPNGIHGSSWAANQGAKQLSPAEIYASRSSVCNIPEVVNRVRQDFRLTNYQPQRQVQMQMQIDFSGATSGPSVRPINAESELSDVETSCKEEPPGASDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESEREISGSTSREGPVSESEADQKAENHNRTPDIEIQASQDEVIVRVSSPLNAHPVSRVIQAFKEAQISVVESKIADANDTVSHTFIIKSQGSEQLTKEKLIAAFSRESNCSLPSSPVG 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1377 621 Gene3D - 439 509 IPR036638 GO:0046983
Bisa06g1377 621 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 244 IPR025610 -
Bisa06g1377 621 PANTHER MYC 29 606 IPR045084 GO:0003700|GO:0006355
Bisa06g1377 621 Pfam Helix-loop-helix DNA-binding domain 450 496 IPR011598 GO:0046983
Bisa06g1377 621 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 449 508 IPR036638 GO:0046983
Bisa06g1377 621 MobiDBLite consensus disorder prediction 519 533 - -
Bisa06g1377 621 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 446 495 IPR011598 GO:0046983
Bisa06g1377 621 MobiDBLite consensus disorder prediction 416 457 - -
Bisa06g1377 621 FunFam Transcription factor bHLH13 439 512 - -
Bisa06g1377 621 Coils Coil 485 505 - -
Bisa06g1377 621 SMART finulus 452 501 IPR011598 GO:0046983
Bisa06g1377 621 MobiDBLite consensus disorder prediction 501 537 - -
Bisa06g1377 621 CDD bHLH_AtAIB_like 443 508 - -
Bisa06g1377 621 MobiDBLite consensus disorder prediction 397 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1377 Bisa-ChrBisa06 48713964 48715829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1377 5 617 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.633 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa06g1377 bHLH-MYC_N 4.2e-55 CL0161