Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1366 ATGATAGTTAAGCGGACTATGAAAACTGAAATGCCGAACTTGAAGCGATGCAAGTTGCAGGAGCTCGATACTGAGGTCTATGGGTGTGCGTCGATTCACAAGAAACGGAGGGCGAATGGATTTTATTCTCATGGTATGCCAGGTGAGGCCGAGGATTTGAGCAGCGGTTCTGGGTCTTGTTGCAGTAAAGAATCGCATTGCGGTGGTGAGTTACTGTCGAATTCAACTTCTATGCAATTGAACGATGGAACAGTACGAGACCGGAGCTCAAAAAGGATTCGGCCTCCATTACTGCGGTCTTCGCGAGGTCGCTCTCAGATGCTTCCGTCCAGGTTCAGTGATTCAGTACTTGATACCTGGAAGAATGAAAAAATTAAAGTGGAGGACACATACTCCAGCTTTAAAGAGGATAATATTTTAGGGGAAGATGGGTCGAGGTTTAGTGAAACGGGATCTGTGAAACAGGGACAGAGAGTCAACGGTGGTTTCAAAAATTTAAAGTGTTATACATTTCCTAAAATAAAAGAGGAACGAGACTTGGGCGCATTAGGTTCCATTGGTTTTGACGGCAGCAAGCAAGCAAGTTCGTTAAATAACATTAGAACGACAGTTGACGAGAGTCGTCCATCATTAGTTAAAACTGAGAGTCACACGTCGGGACTTAATTTGAAGGGCGTAGACCAGAAGTCTAATGGAAATGCTGGAAAGAGGACAGACCTTTACAAACCAGAGGATTTTGCTGCCGGTGATATAGTTTGGGCGAAATGTGGGAAGAGATATCCGGCTTGGCCTGCTATTGTGATTGATCCCATCTTGCAAGCTCCCAAATCGGTCCTGAGCTGTTGTGTTCCAGGTGCAATTTGCGTAATGTTTTTTGGGTATTCAAAAAATGGAAAGCAAAGGGACTATGCATGGGTGAGACAGGGAATGATATTTCCCTTCATGGAATTTATAGAAAGATTCCAGGGTCAGACCCGGTTGTACAAGAGTAAACCAAGTGACTTTAAGGTGGCACTAGAGGAGGCTTTGTTGGCCGAAGATGGTATTCTGGACTCTCATTTGGGGATTGAGCAAATCACTAATGTTGAAGCTCATCCGAGTGGATTTACTGAGGTTACGGGTTCATATGATGATCAAGAAGATAACTGTCAGGACCAGGATACAAGACTTTGTGCTGGCTGTGGCTTCATGTTACCTTGCAAAACCATGAAGAAGATTAAGGATTCTAGTTGTACTCAACTTTATTGTAAACATTGCTCAAAGTTACGAAAATCCAAACAATATTGTGGCATCTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAACGTTTGGGTGCATGCTGAGTGTGACAAAATCTCTGGCAAACTTCTAAAGGATCTGGAACATGTAGATTACTATTGCCCAGATTGCCAAACTAAACTAAACTGTAAATTACCAGCATCACAACCACACAAGTCAAAAATCAAATCAATAGAAAATAGTGAAAAACGTATGATACCTCAAGAAGTGATGGTGGTGTGCAATGGCATGGAAGGAGTTTACATTTCAAGCCTTCATTTAGTTATATGCAAGTGTGGTTCATGTGGGTCAAGGAAGCAGACACTGGGTGAATGGGAAAGGCATACTGGTTGCAGAGCCAAAAAATGGAAATATAGTGTGAAAGTAAAAAGCACAATGCTGCCACTAGAAAAATGGATTACAGAACACACTTCTCAAGCTGGAGTTTCCCTGCAGTTAGATCAGCAGCAGGTACTTGCCTTTTTGCAAGAGAAATATGAGCCAGTTTATGCAAAATGGACTACAGAAAGGTGTGCCATATGTAGATGGGTTGAAGACTGGGATGATAACAAAATTATTATCTGTAACAGGTGCCAAATAGCAGTGCACCAAGAATGCTATGGGGTGAAGAATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTGTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGTCTCTGTCCAGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTTGAAATGTTGTGGGTTCATGTAACCTGTGCCTGGTTCCGGCCTGAAGTTATTTTCCAAAACCATGAGAAAATGGAACCTGCTGTAGGAATTCTTAAAATTCCCTCTAATTCCTTTTTAAAGATTTGCGTTATTTGTAAACAAAGCCATGGTTCCTGCTTAAGTTGTAGCAAATGTGCTACTTATTTTCATGTGACGTGCGCATCAAGAGCAGGATATAGCATGGAATTGCATTCCATGGAGAAGAATGGGAATCAGATAACAAGGAAGCTAATATATTGTGCAGTTCATAGGGTCCCAAAACCAGATTCAGTATTGGTTGTACATACACCTCTAGGGGTTTTCTCTCCGAGAACTGTGCTTCAAAATCATAAGGGAAGCTTCAGGGGATCTAGGCTGGTTTCAACAAAGAATGTAGAACATGAAGAATCTTCAACATCCAAGACCAATGAGGTTGAACCACTCTCTGCTGCCAGATGTCGTGTTTACAGAAGGCCTCTCAATAAGAAGGCTGATGTGCCAATAGTTCATTTATTGAGGGGACCAAGCCATCATTCTTTAAGTGCAATAGCTCAATTGAATAGCTATAAGGATGCTGAAGATTCTAAAGTATTTACTTCTCTCAAGGAACGCCTTCATCATTTGCAGAAAATGGAGAAACATCAAGTTTGCTTTGGAAAATCTGGTATACATGGATGGGGCCTATTTGCGCATCGAGATATACAAGAAGGAGAGATGATTGCTGAGTATTGTGGTGAGCAGGTGAGGCGTAGTGTAGCTGATTTAAGGGAAGCAAAATACGGAGCAGAAGGCAAAGATTGTTATCTGTTCAAGATCAGCGAGGAAGTTGTAATTGATGCGACACATAAGGGCAATATAACACGCTTGATAAATCATTCTTGCATGCCAAACTGCTTTGCAAGGATATTGAGTACGGGTGATGAGGAGAGCCGAATTGTACTTGTTGCCAAGACCAATGTTTCTGCTGGTGAAGAACTAACGTATGATTATTTGTTCGATCCAGATGAATGCGATGAACTGAAAGTTCCATGTCATTGTAAAGCCGTTAAATGTAGAAAATTTATGAACTAG 3135 0.4175 MIVKRTMKTEMPNLKRCKLQELDTEVYGCASIHKKRRANGFYSHGMPGEAEDLSSGSGSCCSKESHCGGELLSNSTSMQLNDGTVRDRSSKRIRPPLLRSSRGRSQMLPSRFSDSVLDTWKNEKIKVEDTYSSFKEDNILGEDGSRFSETGSVKQGQRVNGGFKNLKCYTFPKIKEERDLGALGSIGFDGSKQASSLNNIRTTVDESRPSLVKTESHTSGLNLKGVDQKSNGNAGKRTDLYKPEDFAAGDIVWAKCGKRYPAWPAIVIDPILQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWVRQGMIFPFMEFIERFQGQTRLYKSKPSDFKVALEEALLAEDGILDSHLGIEQITNVEAHPSGFTEVTGSYDDQEDNCQDQDTRLCAGCGFMLPCKTMKKIKDSSCTQLYCKHCSKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISGKLLKDLEHVDYYCPDCQTKLNCKLPASQPHKSKIKSIENSEKRMIPQEVMVVCNGMEGVYISSLHLVICKCGSCGSRKQTLGEWERHTGCRAKKWKYSVKVKSTMLPLEKWITEHTSQAGVSLQLDQQQVLAFLQEKYEPVYAKWTTERCAICRWVEDWDDNKIIICNRCQIAVHQECYGVKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVIFQNHEKMEPAVGILKIPSNSFLKICVICKQSHGSCLSCSKCATYFHVTCASRAGYSMELHSMEKNGNQITRKLIYCAVHRVPKPDSVLVVHTPLGVFSPRTVLQNHKGSFRGSRLVSTKNVEHEESSTSKTNEVEPLSAARCRVYRRPLNKKADVPIVHLLRGPSHHSLSAIAQLNSYKDAEDSKVFTSLKERLHHLQKMEKHQVCFGKSGIHGWGLFAHRDIQEGEMIAEYCGEQVRRSVADLREAKYGAEGKDCYLFKISEEVVIDATHKGNITRLINHSCMPNCFARILSTGDEESRIVLVAKTNVSAGEELTYDYLFDPDECDELKVPCHCKAVKCRKFMN 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1366 1044 Pfam PHD-zinc-finger like domain 666 778 - -
Bisa06g1366 1044 MobiDBLite consensus disorder prediction 813 832 - -
Bisa06g1366 1044 SUPERFAMILY FYVE/PHD zinc finger 611 675 IPR011011 -
Bisa06g1366 1044 Gene3D SET domain 863 1044 IPR046341 -
Bisa06g1366 1044 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1044 IPR025780 -
Bisa06g1366 1044 SUPERFAMILY FYVE/PHD zinc finger 427 489 IPR011011 -
Bisa06g1366 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 661 IPR013083 -
Bisa06g1366 1044 SUPERFAMILY Tudor/PWWP/MBT 239 349 - -
Bisa06g1366 1044 CDD PHD_TCF19_like 429 479 - -
Bisa06g1366 1044 ProSitePatterns Zinc finger PHD-type signature. 613 658 IPR019786 -
Bisa06g1366 1044 ProSiteProfiles Post-SET domain profile. 1028 1044 IPR003616 -
Bisa06g1366 1044 PANTHER PHD FINGER PROTEINS 12 1020 - -
Bisa06g1366 1044 Pfam PWWP domain 249 344 IPR000313 -
Bisa06g1366 1044 ProSiteProfiles PWWP domain profile. 248 317 IPR000313 -
Bisa06g1366 1044 SMART PHD_3 612 659 IPR001965 -
Bisa06g1366 1044 SMART PHD_3 723 779 IPR001965 -
Bisa06g1366 1044 SMART PHD_3 428 480 IPR001965 -
Bisa06g1366 1044 SMART set_7 902 1025 IPR001214 GO:0005515
Bisa06g1366 1044 CDD SET_SETD1-like 891 1040 - -
Bisa06g1366 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 485 IPR013083 -
Bisa06g1366 1044 MobiDBLite consensus disorder prediction 72 105 - -
Bisa06g1366 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 780 IPR013083 -
Bisa06g1366 1044 FunFam Histone-lysine N-methyltransferase 876 1044 - -
Bisa06g1366 1044 ProSiteProfiles SET domain profile. 902 1019 IPR001214 GO:0005515
Bisa06g1366 1044 FunFam Histone-lysine N-methyltransferase 662 781 - -
Bisa06g1366 1044 SMART PostSET_3 1028 1044 IPR003616 -
Bisa06g1366 1044 ProSiteProfiles Zinc finger PHD-type profile. 426 482 IPR019787 -
Bisa06g1366 1044 ProSiteProfiles Extended PHD (ePHD) domain profile. 664 779 IPR034732 -
Bisa06g1366 1044 CDD PHD_ATX3_4_5_like 612 658 IPR042011 -
Bisa06g1366 1044 Gene3D - 236 350 - -
Bisa06g1366 1044 SMART PWWP_4 246 315 IPR000313 -
Bisa06g1366 1044 Pfam SET domain 913 1018 IPR001214 GO:0005515
Bisa06g1366 1044 SUPERFAMILY SET domain 896 1041 IPR046341 -
Bisa06g1366 1044 CDD PWWP_AtATX3-like 248 348 - -
Bisa06g1366 1044 ProSiteProfiles Zinc finger PHD-type profile. 610 661 IPR019787 -
Bisa06g1366 1044 Pfam PHD-finger 428 481 IPR019787 -
Bisa06g1366 1044 Pfam PHD-finger 625 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1366 Bisa-ChrBisa06 48480209 48488220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1366 386 453 EF-hand Containing Proteins AT5G28340 60.294 3.89e-22 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa06g1366 zf-HC5HC2H_2 3.7e-29 CL0390