Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1346 ATGTTGATTTCCATTACCAAAGCTGAAGATTTGGCCAATATAATTGTGGAATATGATCGGACCTTGTTGTCGCTAGTCAATTTGTTGAAGATTAGAGCTATTCTTTTGCTGTTGAAGTCTCTTAAAAAAGTGTCTTATTTTCTGTCTTTAGCTCCGAGCGTCCACCACTCTCTAACTAGATCAGTGAACTCTTCTACCGATTCGCATCCGTCTACCTCAACTTATCCTTTTTGGTGGTTGAAGCTGCATGATCAGTTTTTAAGCATGGCGGATTCAGATGACCTCGTCAAATCTGTTGAAGATCAACAATCAGAGCAAGTGTGTAGTTTCTTCAGGAAACCCGTTAACAAGAAAAATTTAAGAAAACGATCGATTGTTGAAGAAGATGACGAGGAGGATTCACAAAATGGAAGCTCTATGTTACATATTCAGAAAAGACCATCGAAGCCTGACAGTAAGTTGTACTTTTCCTCTGGGCTCTCAAAAAGTGCTGCATCTACTGAACCAGATGAACCTGAAAAACCAGTGTTTCAGTTTGAGTCTTCAAGAGAGATTCAAATTCAACATGATAACAAAGCAACAGCAACTCTAGAGACTGAAACTGATTTTTCAAAAGATGCTAGAGCCATTCGTGAAAGAGCTCTTAAGCGAGCAGAGGAGAGTTTGAAAGGGAAAGGCACTAGTTCTGGGGAAGAGAAATTGTACAAGGGAATCAATAGTTACACAGATTACAAAGCTGGTTTTCGAAGAGAGCATACAATTGCCAGTGAAAAAGCTGGTGGGGCACATGGTCCTCTTAGGGCGTCAGCTCATATAAGAGTTTCGGCAAGATTTGATTATCAGCCAGATATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCATGCAAATTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAATTGGAGAAGGAATGGGAGGAAGCTGAGAAAGCTAGAAGAATGAGATTGGCTGCTGGAGAGGATTTGGATGAGGAGGGGGCTAATTTGACTGATGAAGATAGTGACGATGATTCATTACCATTTGCATGTTTCATTTGTAGGAAGCCTTTTGTAGATCCTGTTGTGACCAACTGCAAGCACTACTTCTGCGAGCATTGTGCTTTGAAGCATCATGCAAAGAATAAGAAGTGCTTTGTGTGCAACAAGCCTACTCTTGGTATTTTTAATGCAGCTCATGAGATACGCAAGAAGATGGCTGCAGAGGGGGTAGGGAGAGCATGGATAGCACTTCCTGAAGGGAGTAAGGTCTCATCAGGTTGGAGGATGAATATTTTGTCATATGGTGAGTAA 1332 0.4137 MLISITKAEDLANIIVEYDRTLLSLVNLLKIRAILLLLKSLKKVSYFLSLAPSVHHSLTRSVNSSTDSHPSTSTYPFWWLKLHDQFLSMADSDDLVKSVEDQQSEQVCSFFRKPVNKKNLRKRSIVEEDDEEDSQNGSSMLHIQKRPSKPDSKLYFSSGLSKSAASTEPDEPEKPVFQFESSREIQIQHDNKATATLETETDFSKDARAIRERALKRAEESLKGKGTSSGEEKLYKGINSYTDYKAGFRREHTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARRMRLAAGEDLDEEGANLTDEDSDDDSLPFACFICRKPFVDPVVTNCKHYFCEHCALKHHAKNKKCFVCNKPTLGIFNAAHEIRKKMAAEGVGRAWIALPEGSKVSSGWRMNILSYGE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1346 443 ProSiteProfiles Zinc finger C3H1-type profile. 279 307 IPR000571 GO:0046872
Bisa06g1346 443 Gene3D - 277 311 - -
Bisa06g1346 443 SUPERFAMILY RING/U-box 356 399 - -
Bisa06g1346 443 ProSitePatterns Zinc finger RING-type signature. 372 381 IPR017907 -
Bisa06g1346 443 ProSiteProfiles Zinc finger RING-type profile. 357 395 IPR001841 -
Bisa06g1346 443 SMART c3hfinal6 279 306 IPR000571 GO:0046872
Bisa06g1346 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 355 414 IPR013083 -
Bisa06g1346 443 SMART ring_2 357 394 IPR001841 -
Bisa06g1346 443 Pfam Zinc finger, C3HC4 type (RING finger) 356 398 - -
Bisa06g1346 443 CDD RING-HC_RNF113A_B 350 403 - -
Bisa06g1346 443 PANTHER ZINC FINGER PROTEIN 183 103 415 IPR039971 -
Bisa06g1346 443 FunFam RING finger protein 113A 355 414 - -
Bisa06g1346 443 SUPERFAMILY CCCH zinc finger 278 310 IPR036855 GO:0046872
Bisa06g1346 443 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 305 IPR000571 GO:0046872
Bisa06g1346 443 FunFam Zinc finger CCCH domain-containing protein 1 277 311 - -
Bisa06g1346 443 MobiDBLite consensus disorder prediction 123 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1346 Bisa-ChrBisa06 48071253 48077493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1346 98 415 C2H2 Transcription Factor Family AT1G01350 68.553 1.50e-162 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa06g1346 zf-C3HC4_3 2.6e-08 CL0229