Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1327 ATGAGAACATCTAGTTTGGTTTTGTTGGCAATTGTGGGTCTCTTTAGTGCCACCACCTCTCCTACAAGTACTGTGGTGGCACTGGCAGTATCCTCCTCGAGGGATGAAGCAAAGGCTTTGCCTGAAAGTGGGTGGTGGAATGGCCAAAACATCTCCGCCACTAGTTGCAAATGGTCTGGCTTTGTGTGCAATGATGCAGGTAGCGTTACAGAAATTTCAATCCCACGGTATCACACTCATCAACCTGCAGTACTCTCATTTTCTGATCTCAATTTTTCTGCCTTCCCAAATTTAGTTCTTATAGATTTCACTGGGATGGGTCTTTCAGGAAGTATCGTTCTTGAATCAGGTGTTCTTACCAACCTCACCCATCTCAACTTATCCCATAATAGTCTTGAAGGTGAGCTACCTAGCATTATAGCAAATCTTACTCAACTTGAGATGCTTGACATTTCTTATAACAATCTTAGAGGTAAGATTCCTGAAAGCCTGGGATATTTGACAAGCCTTGCTCATCTAGACTTGACTGCAAACAATTTGCAAGGTTCTATTCCTTTGTCTTTGTATGAACTGACAAATTTGAAAAATCTTCTGCTTCATTCAAATAAAATATGTGGAGCCATAAGTCCAGAGATAAACAAGTTACAGAGTTTGGTCGTTCTAGACTTGTCTCATAACATGATATCTGGTAGGATTCCTCTAGAGCTTTTCCGACTAATTATTTATCTAGAGGTTGTTGATCTTTCCTCCAACCAGCTATCTGGATCAATACCAGAAGCAGATAGGTTGTGCTGCATCAATAGAACTCTAAACCTTTCCCACAACAAGCTGAATGGGAGTATTCCTTCGCCATTACTTTACTTAGGCATGTCTAACTTGGATCTTAGCTATAATAATCTTAGTGGTAATATACCTTTGGATCTTAGATTGCTGGATAGCGTAAATTTATCATATAATTCCCTTTATGGCTATGTCCCATCAGAAGTATACTGTGGTTTTCCTGAAGATTCTTTTCATGACTTTGGCACTGCAAGACTCCTTCTTCCTGATTCCTCCAATGAAACCATTCTTGCTGGCACTTATGGGTATATTGCTCCTGAACTTGCTTATACATTAACTGTGACCAATAAATGTGATGTTTATAGTTTTGGAGTGGTGGCAGTAGAAATAATGATGGGGATGCATCCAAAGGAGCTTATTTCATTACCGTCAATGGAGCTTCTAAGGATGGCGTTAAGAGATATCTTAGATTCACGCCTAATTTTTCCCTCTTCTCAGACAGATGCTCAAGATGTAGTTGTTGTGGTGACACTTGCAATGGCATGCCTTCATGCAAACCCTAAGTGTCGGCCGTCAATGCAACAAGTAGCTAAGGAACTATTGGTTTCCAGGCCACCATTACCAGTGCCTTTGGATACCATTTCAATCGCCCATTTGATGAATCAGGAGATATATCCTGTACATATATAA 1470 0.4034 MRTSSLVLLAIVGLFSATTSPTSTVVALAVSSSRDEAKALPESGWWNGQNISATSCKWSGFVCNDAGSVTEISIPRYHTHQPAVLSFSDLNFSAFPNLVLIDFTGMGLSGSIVLESGVLTNLTHLNLSHNSLEGELPSIIANLTQLEMLDISYNNLRGKIPESLGYLTSLAHLDLTANNLQGSIPLSLYELTNLKNLLLHSNKICGAISPEINKLQSLVVLDLSHNMISGRIPLELFRLIIYLEVVDLSSNQLSGSIPEADRLCCINRTLNLSHNKLNGSIPSPLLYLGMSNLDLSYNNLSGNIPLDLRLLDSVNLSYNSLYGYVPSEVYCGFPEDSFHDFGTARLLLPDSSNETILAGTYGYIAPELAYTLTVTNKCDVYSFGVVAVEIMMGMHPKELISLPSMELLRMALRDILDSRLIFPSSQTDAQDVVVVVTLAMACLHANPKCRPSMQQVAKELLVSRPPLPVPLDTISIAHLMNQEIYPVHI 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1327 489 SMART serkin_6 263 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa06g1327 489 SMART LRR_typ_2 308 332 IPR003591 -
Bisa06g1327 489 SMART LRR_typ_2 119 142 IPR003591 -
Bisa06g1327 489 SMART LRR_typ_2 143 167 IPR003591 -
Bisa06g1327 489 SMART LRR_typ_2 215 239 IPR003591 -
Bisa06g1327 489 SMART LRR_typ_2 191 214 IPR003591 -
Bisa06g1327 489 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515
Bisa06g1327 489 Gene3D Ribonuclease Inhibitor 268 337 IPR032675 -
Bisa06g1327 489 Gene3D Ribonuclease Inhibitor 164 267 IPR032675 -
Bisa06g1327 489 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 85 327 - -
Bisa06g1327 489 Gene3D Ribonuclease Inhibitor 28 163 IPR032675 -
Bisa06g1327 489 SMART LRR_sd22_2 191 214 - -
Bisa06g1327 489 SMART LRR_sd22_2 215 245 - -
Bisa06g1327 489 SMART LRR_sd22_2 119 145 - -
Bisa06g1327 489 SMART LRR_sd22_2 167 188 - -
Bisa06g1327 489 SUPERFAMILY L domain-like 39 327 - -
Bisa06g1327 489 Gene3D Transferase(Phosphotransferase) domain 1 338 465 - -
Bisa06g1327 489 ProSiteProfiles Protein kinase domain profile. 98 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa06g1327 489 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515
Bisa06g1327 489 SUPERFAMILY Protein kinase-like (PK-like) 339 472 IPR011009 -
Bisa06g1327 489 Pfam Protein kinase domain 339 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa06g1327 489 PRINTS Leucine-rich repeat signature 122 135 - -
Bisa06g1327 489 PRINTS Leucine-rich repeat signature 143 156 - -
Bisa06g1327 489 FunFam Nuclear pore complex protein NUP107 27 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1327 Bisa-ChrBisa06 47695421 47697759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1327 335 465 Receptor kinase-like Gene Family AT1G08590 31.429 1.86e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bisa06g1327 Pkinase 7e-11 CL0016