Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1242 ATGATTAGAAATCATTTTATGGAGATGAATGCTCCTAAAGACAGTTCATCTGTCAGCAAGTATTACAACCTTGCTCATGCTGTGAACGAGAGGGTCATAAGGCAACCATCAATATTACGGGCTGGAACCTTGAGAGACTATCAGCTTGTTGGATTGCAATGGATGCTTTCTTTGTATAACAACAAGTTAAATGGAATATTGGCAGATGAGATGGGTCTTGGAAAAACGGTGCAGGTTATGGCATTGATTGCCTACTTGATGGAATTTAAAGGAAACTACGGCCCTCATCTTATAATTGTCCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTGTATAACTGGTTACCATCAGTGTCATGCATCTTTTATGTTGGGGGAAAGGATCAACGGTCAAAATTATTTTCTCAAGAGGTTTCTGCTTTGAAATTTAATGTCCTTGTGACAACTTATGAATTCATCATGTATGACCGGTCAAAGCTTTCAAAAATTGATTGGAAGTATATCGTAATTGATGAAGCACAGAGGATGAAAGATAGGGATTCAGTACTAGCTCGTGATCTTGATAGATATCGTTGTCAAAGACGCCTGCTTCTGACAGGAACACCCTTACAGAATGATTTGAAGGAACTTTGGTCACTTTTGAATTTACTCCTTCCTGAGGTTTTTGACAATCGGAAAGCATTTCATGATTGGTTCTCAAAACCTTTTCAAAAGGAAGGCCCTAATCAAAATGCAGAGGATGATTGGCTTGAAACAGAGAAGAAGGTTATAATTATCCATCGACTTCATCAGATTCTTGAGCCATTTATGCTCAGACGTCGTGTAGAAGATGTCGAAGGCTCACTACCACCAAAGGTCTCTATAGTCTTGCGGTGTAAAATGTCAGCTATTCAGAGTGCCATTTACGACTGGGTCAAATCCACTGGTACCCTTCGTCTTGATCCTGAGGATGAAAAGCGGAGGGTTCAAAAGAATCCTGTCTACCAGGCAAAGCAGTATAAAACATTAAATAACAGATGTATGGAGCTGCGTAAAACTTGCAATCATCCGTTGCTGAATTACCCATTCTTCAATGACTTATCCAAAGATTTCCTTGTAAAATCCTGTGGGAAACTGTGGATCCTGGATAGAATCCTTATAAAGCTTCAAAGGACTGGACATCGGGTTCTGCTCTTTAGTACCATGACTAAACTCCTAGACATAATGGAAGAATACCTGCAATGGCGACGGCTTGTGTACAGAAGAATTGATGGGACAACTAGTTTAGAAGACCGTGAATCTGCTATAGTGGACTTTAATAGCCCTGATTCAGACTCTTTCATCTTCTTGCTCAGTATTCGAGCTGCTGGGCGAGGACTTAACCTTCAGTCTGCTGACACGGTTATCATATATGATCCTGACCCAAACCCTAAAAATGAGGAGCAGGCAGTTGCAAGAGCGCATCGGATTGGGCAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTTGATAAAATCTCCAGCTATCAGAAAGAGGATGAACTAAGAAGTGGAGGCACTGTTGATATGGAGGAAGAACTTGCTGGTAAGGATCGGTATATTGGATCCATTGAAAGCCTTATAAGGAACAATATTCAACAGTATAAGATTGATATGGCTGATGAGGTAATTAATGCTGGACGTTTTGACCAAAGAACAACTCATGAAGAGAGACGCTTGACTTTGGAGACCTTATTACATGATGACGAAAGGTATCAGGAAACTGTCCACGATGTTCCCTCACTACAGGAGGTAAATCGCATGATTGCTAGGAGTAAAGAAGAAGTTGAATTGTTTGATCAAATGGATGAAGAATTGGATTGGGCTGAAGAGATGACAAGGTATGATCAGGTGCCCAAGTGGCTTCGAGTCAGTACAAGAGAAGTGAATGCCACTATTGCTGCTTTATCAAAAAGACCATCAAAGAACATATTGGATGGTAATGCTGGCATGCAATCCAGTGAAATGGGATCTGAAAGGAGAAGGGGACGACCCAAGGGAAAGAAGATTCTCAATTATAAAGAGTTAGAAGATGAAAATGGAGAATTCTCTGAAGCAAGTTCTGAAGAAAGAAATGGATATTCTGCCCATGAAGATGAAGGGGAAATAGGAGAATTTGAAGATGATGAGCTAAGCGGGGCTGATGGAGCTCAACCTGTTGATAAAGATCAATTGGAGGATCGTCCACACTGTGATGCTGGATATGAATTTCCTCAATCGACAGAAATTGCTAGAAACAATCTTACAGCTGAAGGAGCTGGGTCCTCAGGATCATCCTCTGACAGTCAAAGGTTGACACAGATAGTATCTCCTTCAGTTTCCTCTCAGAAATTTTGTTCCCTCTCTGCATTGGATGCGAGGCCTAGTCCCCTTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCAGCATCTGGTGATTCTCACATGGATAATCAACAGTCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAAGATGAACAAGTTTTGCAACCCAAGATTAAGCGCAAACGCAGCATTCGTGTTCGACCTCGTCATTCCACTTTGCCTGAGGCAAAGTCTGGCAGTGAGGTGGCATCTCTTCACCGTGGAGAATCAGCTCTTTTGGTTGTCCAAGCAGACCATAGACATCAGGTGCAAGCTAGGACTGATCCAGAAACAAAATCATTTGGCGATTCCAGTGCCAGCAGGCATGATCAGAATGAGTCATCATTAAAAAATAAGCGAAGTTTAGCTTCGAGGAGAATAGCCAATACATCCAAATTACATGGCTCCCCAAAGTCTAGTCGATTGAATAGCATTTCTAGTCCTTTAGAGGATGGTGAACACTCAAGAGAAAGTTGGGAGGGGAAGCCTATAAATTCTAGTGGGTCTTCGGCTTTTCCCACTAAAATGCCTGAAATCATCCAGAGAAGGTGCAAGAATGTAATTAGCAAGCTTCAGAGGAGAATAGACAAGGAAGGTCACCAAATTGTACCTTTGCTAAAAGATTTGTGGAAGAGGATTGAAAATTCTGGGTACACAGGTGGATCTGGGAATAGTCTGTTGGATTTGCGAAAGATTGACCAGCGGATTGATAGATTGGAGTATACTGGAGTAATGGAGCTTGTGTTCGATGTGCAGTTTATGTTGAAGAGTGCAATGCATTATTATGGGTTCTCACATGAGGTGAGATCTGAAGCAAGAAAGGTTCATGATCTCTTTTTCGATATCTTGAAGATTGCATTTCCTGATACGGACTTTCGAGAGGCAAGGAGTGCGCTTTCTTTCTCTGGTCAAATTTCAGCCAGTACTGTAACATCTACAAGGCAAGTAGCCGGTAGCCAAAGCAAGAGGCACAGGATGACAAATGAAGTGGAAGCTGATCCCAGCCCTTCACAGAAGCCAGTGCAACGTGGATCTGCTTCAAGTGGCGAAAACTCCAGGATCAAAGTTCATATCCCGCCAAAGGAATCCAGAGCTGGAATTGTCGGCGGCAGCAGCAGAGACCAACTTCAGCAGGAAGATTCTCCACGGCTTACTCATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGACAAATCATCGATGAAGTCTAGGGCTGGGTCAGCTGGCCCGGTTTCACCGCCCAGCATGGGTCCACCTGTAAGAAGTCCAGCGCCAGGTTCAGTCCCCAAGGATGCCAGACTGGCAATTGGCCAGCCATCTCAGCAACCTAATGGATCTGGTGGGTCAGTTGGCTGGGCAAATCCGGTAAAGCGGTTAAGGACAGATTCTGGGAAGAGAAGGCCGAGCCATTTATAG 3831 0.4299 MIRNHFMEMNAPKDSSSVSKYYNLAHAVNERVIRQPSILRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVSCIFYVGGKDQRSKLFSQEVSALKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGPNQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAIQSAIYDWVKSTGTLRLDPEDEKRRVQKNPVYQAKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDIMEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDSFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSYQKEDELRSGGTVDMEEELAGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDDERYQETVHDVPSLQEVNRMIARSKEEVELFDQMDEELDWAEEMTRYDQVPKWLRVSTREVNATIAALSKRPSKNILDGNAGMQSSEMGSERRRGRPKGKKILNYKELEDENGEFSEASSEERNGYSAHEDEGEIGEFEDDELSGADGAQPVDKDQLEDRPHCDAGYEFPQSTEIARNNLTAEGAGSSGSSSDSQRLTQIVSPSVSSQKFCSLSALDARPSPLSKRMTDELEEGEIAASGDSHMDNQQSGSWIHDRDEGEDEQVLQPKIKRKRSIRVRPRHSTLPEAKSGSEVASLHRGESALLVVQADHRHQVQARTDPETKSFGDSSASRHDQNESSLKNKRSLASRRIANTSKLHGSPKSSRLNSISSPLEDGEHSRESWEGKPINSSGSSAFPTKMPEIIQRRCKNVISKLQRRIDKEGHQIVPLLKDLWKRIENSGYTGGSGNSLLDLRKIDQRIDRLEYTGVMELVFDVQFMLKSAMHYYGFSHEVRSEARKVHDLFFDILKIAFPDTDFREARSALSFSGQISASTVTSTRQVAGSQSKRHRMTNEVEADPSPSQKPVQRGSASSGENSRIKVHIPPKESRAGIVGGSSRDQLQQEDSPRLTHPGELVVCKKRRNDRDKSSMKSRAGSAGPVSPPSMGPPVRSPAPGSVPKDARLAIGQPSQQPNGSGGSVGWANPVKRLRTDSGKRRPSHL 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1242 1276 CDD SF2_C_SNF 370 495 - -
Bisa06g1242 1276 MobiDBLite consensus disorder prediction 812 872 - -
Bisa06g1242 1276 PANTHER SNF2/RAD54 HELICASE FAMILY 20 835 - -
Bisa06g1242 1276 FunFam ATP-dependent helicase BRM 284 494 - -
Bisa06g1242 1276 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 221 IPR014001 -
Bisa06g1242 1276 MobiDBLite consensus disorder prediction 1190 1207 - -
Bisa06g1242 1276 FunFam Brahma1 976 1099 - -
Bisa06g1242 1276 MobiDBLite consensus disorder prediction 903 921 - -
Bisa06g1242 1276 MobiDBLite consensus disorder prediction 888 974 - -
Bisa06g1242 1276 MobiDBLite consensus disorder prediction 922 950 - -
Bisa06g1242 1276 Gene3D - 35 283 IPR038718 -
Bisa06g1242 1276 SUPERFAMILY Bromodomain 977 1087 IPR036427 GO:0005515
Bisa06g1242 1276 CDD Bromodomain 981 1084 - -
Bisa06g1242 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 274 IPR027417 -
Bisa06g1242 1276 SMART bromo_6 974 1089 IPR001487 GO:0005515
Bisa06g1242 1276 MobiDBLite consensus disorder prediction 651 780 - -
Bisa06g1242 1276 SMART helicmild6 401 485 IPR001650 -
Bisa06g1242 1276 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 375 552 IPR001650 -
Bisa06g1242 1276 MobiDBLite consensus disorder prediction 749 780 - -
Bisa06g1242 1276 FunFam ATP-dependent helicase BRM 35 283 - -
Bisa06g1242 1276 MobiDBLite consensus disorder prediction 1132 1153 - -
Bisa06g1242 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 615 IPR027417 -
Bisa06g1242 1276 SMART ultradead3 40 229 IPR014001 -
Bisa06g1242 1276 Pfam Helicase conserved C-terminal domain 374 485 IPR001650 -
Bisa06g1242 1276 Gene3D - 976 1130 IPR036427 GO:0005515
Bisa06g1242 1276 Pfam SNF2-related domain 47 351 IPR000330 GO:0005524|GO:0140658
Bisa06g1242 1276 MobiDBLite consensus disorder prediction 1111 1276 - -
Bisa06g1242 1276 Gene3D - 284 494 IPR027417 -
Bisa06g1242 1276 MobiDBLite consensus disorder prediction 827 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1242 Bisa-ChrBisa06 44327335 44335269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1242 65 510 RAD5 or RAD16-like Gene Family AT1G02670 25.725 1.01e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa06g1242 SNF2_N 2.3e-65 CL0023