LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa06g1182	ATGTCTTTCACTGGAACTTTGGATAAATGCAAGGCTTGTGATAAGACTGTTCACGTTGTGGACATGATGACTCTCGAAGGAGTTCCTTACCATAAATCCTGCTTCAAGTGCAGCCACTGCAAGGGCTTTCTCTCGATGAGCAGCTACTCCTGGATGGATGGTGTCCTGTACTGCAAGCCACATTTTGAGCAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAGTCTGCAAAGTCTTCAGAGAAGAATGATCTGTCCAGGACTTCAAGCAGCAAGCTGTCTTCCATGTTCAGTGGAACCCAAGACAAGTGCTCTGTCTGCTCAAAGACCGTGTATCCTCTGGAAAAGATGACGTTGGAAGGGGAGTGCTTCCACAAGTCGTGCTTTAGGTGTGCCCACGCAGGGTGTCCTCTGACGCACTCCTCCTACGCCGCCCTGGACGGCGTGTTGTACTGCAGGCACCACTTTGCGCAGCTGTTCATGGAGAAGGGCAACTACAACCATGTCCTCCAGGCTGCTGCCCACAAGAGGAGTGCCAGCGCCGGCACTCCGCCGCCGGAGCTGGCCACCGAGGAGGGCGCCCACGATGAGCCTGAGAAGGACCCCAAGGAAGAAGCGGCGCCACCCGCGGCAGAAGGAGACGAAGAACCAAAACCAGAAGCCTAG	672	0.5402	MSFTGTLDKCKACDKTVHVVDMMTLEGVPYHKSCFKCSHCKGFLSMSSYSWMDGVLYCKPHFEQLFKESGNFSKNFQSAKSSEKNDLSRTSSSKLSSMFSGTQDKCSVCSKTVYPLEKMTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAAHKRSASAGTPPPELATEEGAHDEPEKDPKEEAAPPAAEGDEEPKPEA	223

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa06g1182	223	Pfam	LIM domain	10	65	IPR001781	-
	Bisa06g1182	223	Pfam	LIM domain	106	161	IPR001781	-
	Bisa06g1182	223	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	36	76	-	-
	Bisa06g1182	223	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	98	131	-	-
	Bisa06g1182	223	Gene3D	Cysteine Rich Protein	5	100	-	-
	Bisa06g1182	223	SMART	lim_4	9	61	IPR001781	-
	Bisa06g1182	223	SMART	lim_4	105	157	IPR001781	-
	Bisa06g1182	223	ProSiteProfiles	LIM domain profile.	8	68	IPR001781	-
	Bisa06g1182	223	Gene3D	Cysteine Rich Protein	101	170	-	-
	Bisa06g1182	223	ProSitePatterns	LIM zinc-binding domain signature.	10	44	IPR001781	-
	Bisa06g1182	223	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	132	171	-	-
	Bisa06g1182	223	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	35	-	-
	Bisa06g1182	223	MobiDBLite	consensus disorder prediction	192	223	-	-
	Bisa06g1182	223	CDD	LIM1_SF3	6	68	-	-
	Bisa06g1182	223	ProSiteProfiles	LIM domain profile.	104	164	IPR001781	-
	Bisa06g1182	223	PANTHER	OS06G0237300 PROTEIN	6	104	-	-
	Bisa06g1182	223	MobiDBLite	consensus disorder prediction	178	223	-	-
	Bisa06g1182	223	FunFam	LIM domain and actin-binding 1	4	74	-	-
	Bisa06g1182	223	FunFam	LIM domain and actin-binding 1	100	170	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa06g1182	Bisa-ChrBisa06	41742197	41744701	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Bisa06g1182		LIM	2.9e-10	CL0167

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa06g1182	06	41742197	41744701	Bisa06g1182	06	41742197	41744701	ECH