LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa06g1136	ATGGCAGGAGGTAGTGAAGCTACGAAATATGCTTCTGCTGCTTCGAACAATACTATGGCTCAATCAACCAAATACACAACACCAATCCGACGGTTCATAGGGGTCAGGCGACGGCCTTCGGGAAGATGGGTGGCTGAGATCAAAGACTCCTCTCAGCACGTAAGGCTATGGCTAGGCACCTACGACACACCCGAAGAAGCGGCTCGGGCCTACGACGAAGCAGCTCGAGCCCTGCGTGGCGAAAATGCCCGAACCAATTTCGCACAGTCCACAGGAGGTCAAGCCAAACACGGGTTAAGCTTTGCTTCCTTGAAAGCCAGGCTGAGCAAGAATCTCCAGAGCATAGTAGCCAAAGCAAGCGAAACGACGTCGTCCAAGAGCAGGGTGAGTGACCATTTCACCTTTGCTAGCATATTTCACCGCAGGGGGAGTTACCTGCAGTACCAAATCCCTGCAGTGGATAGAATGAAGAACATGGAGAATATGGTGCAGCCTAGTGTTATTGTGCCCCCTGCAGCTGAAACTCAGCCTTTTGGTTCTTGGGGAAGTTCTAGTGTGATCTTTGATTGTACCTCGGGATGGGTCGGGCCCCGGGTCCACCAAACCGAGTCGGAGTCCAGGTCGAACGGGTCTGATACAGGGGATCAAGGGACTTTGGAGCAATTGATGGGGTGGCTGGATGATAGTACAATCACTAATAGTCCTGAGGAGGGTTCAAGGAGTAAGAGGCTTAAGGTGTCTTCTTCTGTACTTGTGCCACCAACTTTCAGTGGGTCTCTATATAGTAGTAATTGTGACTCACCATATGATTATGGCTATGATTCCAGAGAGGATCCTCTCCTCTTTCCTTTGGAAACAGGAGGGTCCTCTTCTCCTTCCTTGGACCATTGA	891	0.5084	MAGGSEATKYASAASNNTMAQSTKYTTPIRRFIGVRRRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAQSTGGQAKHGLSFASLKARLSKNLQSIVAKASETTSSKSRVSDHFTFASIFHRRGSYLQYQIPAVDRMKNMENMVQPSVIVPPAAETQPFGSWGSSSVIFDCTSGWVGPRVHQTESESRSNGSDTGDQGTLEQLMGWLDDSTITNSPEEGSRSKRLKVSSSVLVPPTFSGSLYSSNCDSPYDYGYDSREDPLLFPLETGGSSSPSLDH	296

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa06g1136	296	MobiDBLite	consensus disorder prediction	198	218	-	-
	Bisa06g1136	296	SMART	rav1_2	31	94	IPR001471	GO:0003700\|GO:0006355
	Bisa06g1136	296	PRINTS	Ethylene responsive element binding protein signature	32	43	IPR001471	GO:0003700\|GO:0006355
	Bisa06g1136	296	PRINTS	Ethylene responsive element binding protein signature	54	70	IPR001471	GO:0003700\|GO:0006355
	Bisa06g1136	296	MobiDBLite	consensus disorder prediction	276	296	-	-
	Bisa06g1136	296	SUPERFAMILY	DNA-binding domain	32	89	IPR016177	GO:0003677
	Bisa06g1136	296	ProSiteProfiles	AP2/ERF domain profile.	31	88	IPR001471	GO:0003700\|GO:0006355
	Bisa06g1136	296	Pfam	AP2 domain	31	80	IPR001471	GO:0003700\|GO:0006355
	Bisa06g1136	296	FunFam	ethylene-responsive transcription factor RAP2-11	30	89	-	-
	Bisa06g1136	296	Gene3D	AP2/ERF domain	30	89	IPR036955	GO:0003700\|GO:0006355
	Bisa06g1136	296	CDD	AP2	31	90	IPR001471	GO:0003700\|GO:0006355
	Bisa06g1136	296	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	22	133	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa06g1136	Bisa-ChrBisa06	40490685	40491575	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa06g1136	31	104	AP2-EREBP Transcription Factor Family	AT5G19790	59.459	1.15e-25	100

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa06g1136		AP2	9.5e-16	CL0081